Os08g0156900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Spo11/DNA topoisomerase VI, subunit A family protein.
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Os08g0156900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Spo11/DNA topoisomerase VI, subunit A family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.04 | 0.477 | 5.39 | -0.0416 | 1.02 | -0.98 | -0.848 | 0.341 | -0.317 | 3.77 | 22.4 | 1429 | -- | -- |
| 103.31 | 0.473 | 5.37 | 0.0741 | 1.02 | -0.978 | -0.871 | -- | -0.288 | 3.76 | 22.42 | 1446 | -- | -- |
| 105.1 | 0.477 | 5.38 | -0.0481 | 1.01 | -0.992 | -- | 0.405 | -0.314 | 3.88 | 22.37 | 1410 | -- | -- |
| 105.49 | 0.478 | 5.37 | 0.0879 | 1.01 | -0.992 | -- | -- | -0.281 | 3.87 | 22.34 | 1428 | -- | -- |
| 158.05 | 0.586 | 5.39 | -0.0486 | -- | -1.07 | -- | 0.481 | -0.32 | -- | 22.31 | 1184 | -- | -- |
| 141.66 | 0.558 | 5.3 | 0.419 | 1.07 | -- | -0.877 | -- | 0.0553 | 3.71 | -- | -- | -- | -- |
| 143.92 | 0.562 | 5.29 | 0.432 | 1.06 | -- | -- | -- | 0.0602 | 3.81 | -- | -- | -- | -- |
| 158.65 | 0.587 | 5.38 | 0.108 | -- | -1.07 | -- | -- | -0.283 | -- | 22.39 | 1207 | -- | -- |
| 105.57 | 0.479 | 5.37 | -- | 1.01 | -1.03 | -- | -- | -0.293 | 3.87 | 22.21 | 1421 | -- | -- |
| 206.36 | 0.671 | 5.3 | 0.476 | -- | -- | -- | -- | 0.0886 | -- | -- | -- | -- | -- |
| 148.85 | 0.571 | 5.3 | -- | 1.07 | -- | -- | -- | 0.0121 | 3.81 | -- | -- | -- | -- |
| 158.92 | 0.587 | 5.38 | -- | -- | -1.1 | -- | -- | -0.303 | -- | 22.36 | 1245 | -- | -- |
| 212.35 | 0.68 | 5.31 | -- | -- | -- | -- | -- | 0.0358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 6 | 102.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 9 | 102.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 20 | 103.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 36 | 103.58 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 54 | 103.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 61 | 103.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 100 | 104.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 173 | 104.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 186 | 104.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 216 | 104.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 253 | 104.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 265 | 104.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 293 | 104.87 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 395 | 105.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 15 |
| 531 | 105.53 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 589 | 105.65 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 605 | 105.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 728 | 105.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |