BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0156900 Os08g0156900|AK073344
(385 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0156900 Spo11/DNA topoisomerase VI, subunit A family p... 727 0.0
Os03g0284800 Spo11/DNA topoisomerase VI, subunit A family p... 192 3e-49
Os03g0752200 Similar to AtSPO11-1 137 1e-32
Os12g0622500 Spo11/DNA topoisomerase VI, subunit A family p... 118 8e-27
>Os08g0156900 Spo11/DNA topoisomerase VI, subunit A family protein
Length = 385
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/385 (92%), Positives = 358/385 (92%)
Query: 1 MAEAGVAAASLFGADRRLCSADILPPAEVRARIEVAVLNFLAALTDXXXXXXXXXXXXXX 60
MAEAGVAAASLFGADRRLCSADILPPAEVRARIEVAVLNFLAALTD
Sbjct: 1 MAEAGVAAASLFGADRRLCSADILPPAEVRARIEVAVLNFLAALTDPAAPAISALPLISR 60
Query: 61 XXXXXXXXXXXXXDDVSSVYLSYASCKRSLTRANDAKAFVRVWKVMEMCYKILGEGKLVT 120
DDVSSVYLSYASCKRSLTRANDAKAFVRVWKVMEMCYKILGEGKLVT
Sbjct: 61 GAANRGLRRALLRDDVSSVYLSYASCKRSLTRANDAKAFVRVWKVMEMCYKILGEGKLVT 120
Query: 121 LRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVVQGPE 180
LRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVVQGPE
Sbjct: 121 LRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVVQGPE 180
Query: 181 EEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAEDRIYSHLPCIL 240
EEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAEDRIYSHLPCIL
Sbjct: 181 EEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAEDRIYSHLPCIL 240
Query: 241 ITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSISMGLESYRYAC 300
ITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSISMGLESYRYAC
Sbjct: 241 ITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSISMGLESYRYAC 300
Query: 301 NVKWLGLRGDDLQLIPQSAYQELKPRDLQIAKSLLSSKFLQDKHRAELTLMLETGKRAEI 360
NVKWLGLRGDDLQLIPQSAYQELKPRDLQIAKSLLSSKFLQDKHRAELTLMLETGKRAEI
Sbjct: 301 NVKWLGLRGDDLQLIPQSAYQELKPRDLQIAKSLLSSKFLQDKHRAELTLMLETGKRAEI 360
Query: 361 EALYSHGFDFLGKYVARKIVQGDYI 385
EALYSHGFDFLGKYVARKIVQGDYI
Sbjct: 361 EALYSHGFDFLGKYVARKIVQGDYI 385
>Os03g0284800 Spo11/DNA topoisomerase VI, subunit A family protein
Length = 442
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 176/317 (55%), Gaps = 14/317 (4%)
Query: 75 DVSSVYLSYASCKRSLTRANDAKAFVRVWKVMEMCYKILGEGKLVTLRELFYTLLSESPT 134
D+ + L R A+ +V+ + + +L G VT R+LFYT +
Sbjct: 134 DLDRIVLVRRESARPFANVATARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVK---- 189
Query: 135 YFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVVQGPEEEHVDCSILGPSGH 194
F Q + + DV +L CTR SL ++AS +G ++GRL + + +DC+ +G G
Sbjct: 190 LFGDQAQSDAVLDDVSCMLGCTRSSLHVVASEKGVVVGRLTF-ADDGDRIDCTRMGVGGK 248
Query: 195 AITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAEDRIYSHLPCILITAKGYPDLATRFI 254
AI +++ +S + SDA +I++VEKDA F RLAEDR Y+ PCI++TAKG PD+ATR
Sbjct: 249 AIPPNIDRVSGI--ESDALFILLVEKDAAFMRLAEDRFYNRFPCIILTAKGQPDVATRLF 306
Query: 255 LHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDLQ 313
L RL + +P+ ALVD +P GL IL Y GS +M +S ++KWLG+R DL
Sbjct: 307 LRRL-KVELKLPVLALVDSDPYGLKILSVYMCGSKNMSYDSANLTTPDIKWLGVRPSDLD 365
Query: 314 --LIPQSAYQELKPRDLQIAKSLLSSKFLQDKHR--AELTLMLETGKRAEIEALYSHGFD 369
+P+ + D+++ K LL F++ EL ML T ++AEI+AL S GF
Sbjct: 366 KYRVPEQCRLPMTDHDIKVGKELLEEDFVKQNEGWVKELETMLRTRQKAEIQALSSFGFQ 425
Query: 370 FLGK-YVARKIVQGDYI 385
+L + Y+ K+ Q D+I
Sbjct: 426 YLTEVYLPLKLQQQDWI 442
>Os03g0752200 Similar to AtSPO11-1
Length = 381
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 151/276 (54%), Gaps = 15/276 (5%)
Query: 117 KLVTLRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVV 176
K + R+++Y P+ F Q V++ + D+ L +C+R +L ++ ++G ++G +
Sbjct: 114 KHCSKRDIYYMY----PSIFQEQAVVDRAINDICVLFKCSRHNLNVVPVAKGLVMGWIRF 169
Query: 177 QGPEEEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAEDRIYSHL 236
E+E V C + +I + + ++ +D YI++VEK+ +FQRLA D+
Sbjct: 170 LEGEKE-VYCVTNVNAAFSIPVSIEAIKDVVSVAD--YILIVEKETVFQRLANDKFCERN 226
Query: 237 PCILITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSISMGLE-S 295
CI+IT +GYPD+ TR L L + ++P++ LVD +P G IL TYK+GS+ + + +
Sbjct: 227 RCIVITGRGYPDIPTRRFLRYLVEQL-HLPVYCLVDADPYGFDILATYKFGSLQLAYDAN 285
Query: 296 YRYACNVKWLGLRGDDLQ--LIPQSAYQELKPRDLQIAKSLLSSKFLQ---DKHRAELTL 350
+ +++WLG+ D + +P L D + A+ +LS +L + R EL
Sbjct: 286 FLRVPDIRWLGVFTSDFEDYRLPDCCLLHLSSEDRRKAEGILSRCYLHREAPQWRLELEA 345
Query: 351 MLETGKRAEIEALYSHGFDFLG-KYVARKIVQGDYI 385
ML+ G + EIEAL + FL +Y+ +KI QG +I
Sbjct: 346 MLQKGVKFEIEALSACSISFLSEEYIPKKIKQGRHI 381
>Os12g0622500 Spo11/DNA topoisomerase VI, subunit A family protein
Length = 487
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 88 RSLTRANDAKAFVRVWKVMEMCYKILGEGKLVTLRELFYTLLSESPTYFTCQRHVNQTVQ 147
RS AN + R +++ + LG G ++ R + YT + F Q +Q +
Sbjct: 175 RSFCNANQREVASRTGYTIDLIERTLGAGLNISKRTVLYT----NKDLFGDQSKSDQAIN 230
Query: 148 DVVSLLRCTRQSLGIMASSRGALIGRLVVQGPEEEHVDCSILGPSGHAITGDLNVLSKL- 206
D+ +L R SLGI+A+ +G ++G + ++ + + CSI G I L+ + +
Sbjct: 231 DICALTNIRRGSLGIIAAEKGIVVGNIFLELTNGKSISCSI----GVQIPHRLDQIKDVC 286
Query: 207 --IFSSDARYIIVVEKDAIFQRLAEDRIYSHLPCILITAKGYPDLATRFILHRLSQTYPN 264
I S + YI+VVEK + L E +++ CI++T G P L TR L L Q
Sbjct: 287 VEIGSRNIEYILVVEKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTRDFLRFLKQR-TG 345
Query: 265 MPIFALVDWNPAGLAILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDLQL--IPQSAYQ 321
+P+F L D +P G++IL TY GS + +++ + ++ W+GL D+ + ++ Y
Sbjct: 346 LPVFGLCDPDPEGISILATYARGSCNSAYDNFNISVPSICWVGLSSSDMIKLNLSETNYS 405
Query: 322 ELKPRDLQIAKSLLSSKFLQDKHRAELTLMLETGKRAEIEALYSHGFDFL 371
L D + K+L L D + + M+ K+A EA++S GFD+
Sbjct: 406 RLSREDKTMLKNLWQDD-LSDVWKRRIEEMISFDKKASFEAIHSLGFDYF 454
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,138,062
Number of extensions: 401787
Number of successful extensions: 925
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 4
Length of query: 385
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 282
Effective length of database: 11,657,759
Effective search space: 3287488038
Effective search space used: 3287488038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)