Os03g0284800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Spo11/DNA topoisomerase VI, subunit A family protein.
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Os03g0284800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Spo11/DNA topoisomerase VI, subunit A family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.76 | 0.296 | 8.38 | 1.83 | 0.738 | -0.347 | -0.63 | -2.66 | 0.277 | 6.45 | 31.59 | 1452 | -- | -- |
| 45.87 | 0.315 | 8.45 | 1.23 | 0.78 | -0.315 | -0.569 | -- | 0.139 | 6.7 | 42.99 | 2289 | -- | -- |
| 40.18 | 0.295 | 8.38 | 1.83 | 0.78 | -0.365 | -- | -2.65 | 0.282 | 6.47 | 32.2 | 2025 | -- | -- |
| 46.38 | 0.317 | 8.46 | 1.2 | 0.735 | -0.344 | -- | -- | 0.123 | 6.45 | 79.95 | 2863 | -- | -- |
| 68.88 | 0.387 | 8.39 | 1.79 | -- | -0.435 | -- | -2.34 | 0.274 | -- | 32.1 | 2808 | -- | -- |
| 48.11 | 0.325 | 8.44 | 1.35 | 0.75 | -- | -0.522 | -- | 0.191 | 6.37 | -- | -- | -- | -- |
| 48.78 | 0.327 | 8.44 | 1.34 | 0.748 | -- | -- | -- | 0.193 | 6.34 | -- | -- | -- | -- |
| 74.34 | 0.402 | 8.47 | 1.19 | -- | -0.411 | -- | -- | 0.124 | -- | 45.79 | 2815 | -- | -- |
| 55.42 | 0.347 | 8.54 | -- | 0.746 | -1.03 | -- | -- | -0.263 | 6.44 | 70.13 | 47520 | -- | -- |
| 77.83 | 0.412 | 8.46 | 1.36 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 96.11 | 0.459 | 8.48 | -- | 0.766 | -- | -- | -- | 0.0437 | 6.25 | -- | -- | -- | -- |
| 83.99 | 0.427 | 8.56 | -- | -- | -1.05 | -- | -- | -0.249 | -- | 27.4 | 47520 | -- | -- |
| 126.6 | 0.525 | 8.49 | -- | -- | -- | -- | -- | 0.0582 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.92 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 9 |
| 2 | 36.18 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 5 | 36.36 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 6 | 36.37 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 9 | 36.41 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 14 | 36.59 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 15 | 36.66 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 25 | 36.80 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 26 | 36.81 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 34 | 36.88 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 45 | 36.98 | wind | 5.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 50 | 37.04 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 65 | 37.16 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 73 | 37.20 | wind | 5.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 80 | 37.24 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 98 | 37.43 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 119 | 37.52 | wind | 7.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 131 | 37.56 | wind | 5.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 220 | 37.90 | wind | 7.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 259 | 38.03 | wind | 7.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 275 | 38.09 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 279 | 38.10 | wind | 7.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 295 | 38.15 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 311 | 38.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 411 | 38.50 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 521 | 38.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 533 | 38.80 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 558 | 38.87 | wind | 7.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 566 | 38.91 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 571 | 38.91 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 589 | 38.95 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 590 | 38.95 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 599 | 38.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 643 | 39.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 646 | 39.11 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 653 | 39.12 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 679 | 39.16 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 742 | 39.26 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 788 | 39.34 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 834 | 39.39 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 861 | 39.43 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 865 | 39.43 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 874 | 39.44 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 16 | NA |