BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0284800 Os03g0284800|AK073184
(442 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G02820.1 | chr5:642658-644123 FORWARD LENGTH=428 600 e-172
AT3G13170.1 | chr3:4231560-4234192 REVERSE LENGTH=363 221 7e-58
AT1G63990.1 | chr1:23743323-23745351 REVERSE LENGTH=384 195 5e-50
>AT5G02820.1 | chr5:642658-644123 FORWARD LENGTH=428
Length = 427
Score = 600 bits (1547), Expect = e-172, Method: Compositional matrix adjust.
Identities = 275/355 (77%), Positives = 322/355 (90%)
Query: 88 VADQDSASVTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESAR 147
VAD +SV + I +++ ARSIL+G GFSF+VPSRAASNQ+Y+P+LDRIVL + + R
Sbjct: 73 VADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVPELDRIVLKDKSTLR 132
Query: 148 PFANVATARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCM 207
PFA+V++ RK TIT R+L+L+H + R IHVTKRDLFYTDVKLF DQ QSDAVLDDVSCM
Sbjct: 133 PFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCM 192
Query: 208 LGCTRSSLHVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFI 267
LGCTRSSL+V+A+EKGVVVGRL F+D+GD IDCT+MG+GGKAIPPNIDRV ++SDA+FI
Sbjct: 193 LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFI 252
Query: 268 LLVEKDAAFMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPY 327
LLVEKDAA+MRLAEDRFYNRFPCII+TAKGQPDVATRLFLR++K+ELKLPVLALVDSDPY
Sbjct: 253 LLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 312
Query: 328 GLKILSVYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKE 387
GLKILSVY CGSKNMSYDSANLTTPDIKWLG+RPSDLDKY++PEQCRLPMT+ DIK GK+
Sbjct: 313 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKD 372
Query: 388 LLEEDFVKQNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442
+LEEDFVK+N GWV+EL M++T+QKAEIQALSSFGFQYL+EVYLPLKLQQQDW+
Sbjct: 373 MLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL 427
>AT3G13170.1 | chr3:4231560-4234192 REVERSE LENGTH=363
Length = 362
Score = 221 bits (562), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 116/278 (41%), Positives = 168/278 (60%), Gaps = 1/278 (0%)
Query: 163 RVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCMLGCTRSSLHVVASEK 222
RVL +V +L+ H +KRD++Y F Q+ D + D+ + C+R +L+VV+
Sbjct: 81 RVLLIVQQLLQENRHASKRDIYYMHPSAFKAQSIVDRAIGDICILFQCSRYNLNVVSVGN 140
Query: 223 GVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKDAAFMRLAED 282
G+V+G L F + G + DC +P ++ V I S A +IL+VEK+ F RLA D
Sbjct: 141 GLVMGWLKFREAGRKFDCLNSLNTAYPVPVLVEEVEDIVSLAEYILVVEKETVFQRLAND 200
Query: 283 RFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPYGLKILSVYMCGSKNM 342
F CI++T +G PDV+TR FLR L +L LPV LVD DPYG +IL+ Y GS M
Sbjct: 201 MFCKTNRCIVITGRGYPDVSTRRFLRLLMEKLHLPVHCLVDCDPYGFEILATYRFGSMQM 260
Query: 343 SYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDFVKQN-EGWV 401
+YD +L PD+KWLG PSD + Y VP+QC LP+T+ D K + +L ++K+ W
Sbjct: 261 AYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKKRTEAMLLRCYLKREMPQWR 320
Query: 402 KELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQ 439
ELETML+ K EI+ALS +L+EVY+P K++++
Sbjct: 321 LELETMLKRGVKFEIEALSVHSLSFLSEVYIPSKIRRE 358
>AT1G63990.1 | chr1:23743323-23745351 REVERSE LENGTH=384
Length = 383
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 184/328 (56%), Gaps = 14/328 (4%)
Query: 123 SRAASNQVYLPDLDRIVLVRRESARPFANVATARKATITARVLSLVHAVLRRGIHVTKRD 182
S + N+ L D+ I L + N TA+ +V+ + +L + VT+R+
Sbjct: 62 SNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVTQRE 121
Query: 183 LFYTDV----KLFGDQAQSDAVLDDVSCMLGCTRSSLHVVASEKGVVVGRLTFADDG-DR 237
LFY + F Q + + + DV +L C+R SL ++AS +G+V GRL + G +
Sbjct: 122 LFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQEPGKEA 181
Query: 238 IDCTRMGVGGKAIPPNIDRVSG--IESDALFILLVEKDAAFMRLAEDRFYNRFPCIILTA 295
+DC+ G G AI +++ + + +DA +I++VEK A F RL EDR +N PC+ +TA
Sbjct: 182 VDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPCVFITA 241
Query: 296 KGQPDVATRLFLRRLKVEL-KLPVLALVDSDPYGLKILSVYMCGSKNMSYDSANLTTPDI 354
KG PD+ATR FL R+ LP+L LVD +P GL IL + GS M ++ ++
Sbjct: 242 KGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEAYRYAC-NV 300
Query: 355 KWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDFVKQNEGWVKELETMLRTRQKA 414
KW+G+R DL+ +PE+ +P+ D ++ K LL +++N +++EL M++T ++A
Sbjct: 301 KWIGLRGDDLN--LIPEESLVPLKPKDSQIAKSLLSSKILQEN--YIEELSLMVQTGKRA 356
Query: 415 EIQALSSFGFQYLTEVYLPLKLQQQDWI 442
EI+AL G+ YL + Y+ K+ Q +I
Sbjct: 357 EIEALYCHGYNYLGK-YIATKIVQGKYI 383
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,902,546
Number of extensions: 307075
Number of successful extensions: 684
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 3
Length of query: 442
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 340
Effective length of database: 8,310,137
Effective search space: 2825446580
Effective search space used: 2825446580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)