Os12g0622500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Spo11/DNA topoisomerase VI, subunit A family protein.
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Os12g0622500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Spo11/DNA topoisomerase VI, subunit A family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.67 | 0.516 | 6.05 | 0.147 | 1.24 | -3.67 | -0.0864 | -8.29 | 0.344 | 12.7 | 19.9 | 4170 | -- | -- |
| 136.35 | 0.544 | 6.27 | -0.168 | 1.34 | -1.14 | -0.00229 | -- | 0.2 | 12.7 | 32.32 | 1269 | -- | -- |
| 120.7 | 0.512 | 6.05 | 0.143 | 1.24 | -3.69 | -- | -8.34 | 0.343 | 12.7 | 19.88 | 4166 | -- | -- |
| 134.05 | 0.539 | 6.28 | -0.0915 | 1.25 | -1.13 | -- | -- | 0.215 | 12.3 | 53.29 | 1921 | -- | -- |
| 213.84 | 0.681 | 6.05 | 0.0631 | -- | -3.85 | -- | -8.77 | 0.343 | -- | 19.87 | 4608 | -- | -- |
| 155.62 | 0.585 | 6.23 | 0.29 | 1.2 | -- | -0.168 | -- | 0.429 | 12.5 | -- | -- | -- | -- |
| 155.74 | 0.584 | 6.23 | 0.284 | 1.2 | -- | -- | -- | 0.428 | 12.5 | -- | -- | -- | -- |
| 191.92 | 0.648 | 6.31 | -0.112 | -- | -1.95 | -- | -- | 0.149 | -- | 69.99 | 1700 | -- | -- |
| 134.24 | 0.54 | 6.27 | -- | 1.25 | -1.09 | -- | -- | 0.229 | 12.3 | 70.33 | 1918 | -- | -- |
| 246.72 | 0.734 | 6.25 | 0.242 | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
| 157.87 | 0.588 | 6.24 | -- | 1.2 | -- | -- | -- | 0.397 | 12.5 | -- | -- | -- | -- |
| 192.23 | 0.648 | 6.31 | -- | -- | -1.91 | -- | -- | 0.165 | -- | 69.87 | 1700 | -- | -- |
| 248.27 | 0.735 | 6.26 | -- | -- | -- | -- | -- | 0.381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.35 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 4 | 109.67 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 5 | 109.97 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 7 | 110.36 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 10 | 111.10 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 14 | 111.71 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 16 | 111.80 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 18 | 111.89 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 26 | 111.90 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 65 | 112.06 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 78 | 112.17 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 81 | 112.27 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 102 | 112.50 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 103 | 112.50 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 111 | 112.53 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 155 | 112.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 156 | 112.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 166 | 112.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 169 | 112.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 193 | 112.95 | humidity | 50.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 198 | 112.98 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 204 | 113.01 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 247 | 113.19 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 253 | 113.21 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 313 | 113.38 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 314 | 113.38 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 341 | 113.45 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 347 | 113.48 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 348 | 113.48 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 369 | 113.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 373 | 113.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 2 |
| 374 | 113.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 388 | 113.60 | radiation | 10.0 | 43200 | < th | dose dependent | sin | 15 | NA |
| 392 | 113.61 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 394 | 113.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 442 | 113.74 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 450 | 113.75 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 474 | 113.78 | humidity | 50.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 521 | 113.97 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 524 | 113.97 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 525 | 113.98 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 529 | 114.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 534 | 114.04 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 537 | 114.05 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 549 | 114.09 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 554 | 114.10 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 558 | 114.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 5 |
| 581 | 114.14 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 598 | 114.20 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 605 | 114.22 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 612 | 114.23 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 694 | 114.44 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 748 | 114.52 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 774 | 114.57 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 787 | 114.59 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 821 | 114.65 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 855 | 114.72 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 858 | 114.72 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 906 | 114.79 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 911 | 114.79 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 957 | 114.85 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 983 | 114.89 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 990 | 114.90 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 999 | 114.91 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 2 |