BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0156900 Os08g0156900|AK073344
(385 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G63990.1 | chr1:23743323-23745351 REVERSE LENGTH=384 470 e-133
AT5G02820.1 | chr5:642658-644123 FORWARD LENGTH=428 182 2e-46
AT3G13170.1 | chr3:4231560-4234192 REVERSE LENGTH=363 129 3e-30
>AT1G63990.1 | chr1:23743323-23745351 REVERSE LENGTH=384
Length = 383
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/385 (60%), Positives = 283/385 (73%), Gaps = 2/385 (0%)
Query: 1 MAEAGVAAASLFGADRRLCSADILPPAEVRARIEVAVLNFLAALTDXXXXXXXXXXXXXX 60
M E+ ++ F +D+ L ADIL P E RARIEV+VLN L L
Sbjct: 1 MEESSGLSSMKFFSDQHLSYADILLPHEARARIEVSVLNLLRILNSPDPAISDLSLINRK 60
Query: 61 XXXXXXXXXXXXXDDVSSVYLSYASCKRSLTRANDAKAFVRVWKVMEMCYKILGEGKLVT 120
DVS ++LS + K SLT A AKAFVRVWKVME+C++IL + K VT
Sbjct: 61 RSNSCINKGILT--DVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVT 118
Query: 121 LRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVVQGPE 180
RELFY LL +SP YF+ Q VN++VQDVV+LLRC+R SLGIMASSRG + GRL +Q P
Sbjct: 119 QRELFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQEPG 178
Query: 181 EEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAEDRIYSHLPCIL 240
+E VDCS G SG AITGDLN+L I +DARYII+VEK AIF RL EDR+++H+PC+
Sbjct: 179 KEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPCVF 238
Query: 241 ITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSISMGLESYRYAC 300
ITAKGYPD+ATRF LHR+S T+P++PI LVDWNPAGLAILCT+K+GSI MGLE+YRYAC
Sbjct: 239 ITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEAYRYAC 298
Query: 301 NVKWLGLRGDDLQLIPQSAYQELKPRDLQIAKSLLSSKFLQDKHRAELTLMLETGKRAEI 360
NVKW+GLRGDDL LIP+ + LKP+D QIAKSLLSSK LQ+ + EL+LM++TGKRAEI
Sbjct: 299 NVKWIGLRGDDLNLIPEESLVPLKPKDSQIAKSLLSSKILQENYIEELSLMVQTGKRAEI 358
Query: 361 EALYSHGFDFLGKYVARKIVQGDYI 385
EALY HG+++LGKY+A KIVQG YI
Sbjct: 359 EALYCHGYNYLGKYIATKIVQGKYI 383
>AT5G02820.1 | chr5:642658-644123 FORWARD LENGTH=428
Length = 427
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 161/273 (58%), Gaps = 14/273 (5%)
Query: 119 VTLRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVVQG 178
VT R+LFYT + F Q + + DV +L CTR SL ++A+ +G ++GRL+
Sbjct: 163 VTKRDLFYTDVK----LFQDQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSD 218
Query: 179 PEEEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAEDRIYSHLPC 238
+ +DC+ +G G AI +++ + + SDA +I++VEKDA + RLAEDR Y+ PC
Sbjct: 219 -NGDMIDCTKMGMGGKAIPPNIDRVGDM--QSDAMFILLVEKDAAYMRLAEDRFYNRFPC 275
Query: 239 ILITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSISMGLESYRY 298
I++TAKG PD+ATR L ++ +P+ ALVD +P GL IL Y GS +M +S
Sbjct: 276 IIVTAKGQPDVATRLFLRKMKMEL-KLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANL 334
Query: 299 AC-NVKWLGLRGDDLQ--LIPQSAYQELKPRDLQIAKSLLSSKFLQDKHR--AELTLMLE 353
++KWLG+R DL IP+ + +D++ K +L F++ EL LM++
Sbjct: 335 TTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVK 394
Query: 354 TGKRAEIEALYSHGFDFLGK-YVARKIVQGDYI 385
T ++AEI+AL S GF +L + Y+ K+ Q D++
Sbjct: 395 TKQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL 427
>AT3G13170.1 | chr3:4231560-4234192 REVERSE LENGTH=363
Length = 362
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 154/284 (54%), Gaps = 17/284 (5%)
Query: 104 KVMEMCYKILGEGKLVTLRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIM 163
+V+ + ++L E + + R+++Y P+ F Q V++ + D+ L +C+R +L ++
Sbjct: 81 RVLLIVQQLLQENRHASKRDIYYM----HPSAFKAQSIVDRAIGDICILFQCSRYNLNVV 136
Query: 164 ASSRGALIGRLVVQGPEEEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAI 223
+ G ++G L + + DC + + + + + ++ S A YI+VVEK+ +
Sbjct: 137 SVGNGLVMGWLKFREAGRKF-DCLNSLNTAYPVPVLVEEVEDIV--SLAEYILVVEKETV 193
Query: 224 FQRLAEDRIYSHLPCILITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCT 283
FQRLA D CI+IT +GYPD++TR L RL ++P+ LVD +P G IL T
Sbjct: 194 FQRLANDMFCKTNRCIVITGRGYPDVSTRRFL-RLLMEKLHLPVHCLVDCDPYGFEILAT 252
Query: 284 YKYGSISMG--LESYRYACNVKWLGLRGDDLQL--IPQSAYQELKPRDLQIAKSLLSSKF 339
Y++GS+ M +ES R A ++KWLG D ++ +P+ L D + +++L +
Sbjct: 253 YRFGSMQMAYDIESLR-APDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKKRTEAMLLRCY 311
Query: 340 LQ---DKHRAELTLMLETGKRAEIEALYSHGFDFLGK-YVARKI 379
L+ + R EL ML+ G + EIEAL H FL + Y+ KI
Sbjct: 312 LKREMPQWRLELETMLKRGVKFEIEALSVHSLSFLSEVYIPSKI 355
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,181,771
Number of extensions: 266135
Number of successful extensions: 576
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 3
Length of query: 385
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 285
Effective length of database: 8,364,969
Effective search space: 2384016165
Effective search space used: 2384016165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)