BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0613600 Os12g0613600|AK111002
(427 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0613600 Remorin, C-terminal region domain containing p... 660 0.0
Os04g0620200 Remorin, C-terminal region domain containing p... 142 4e-34
Os03g0120200 Remorin, C-terminal region domain containing p... 140 3e-33
Os02g0116800 Remorin, C-terminal region domain containing p... 137 2e-32
AK101665 107 2e-23
>Os12g0613600 Remorin, C-terminal region domain containing protein
Length = 427
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/427 (78%), Positives = 337/427 (78%)
Query: 1 MEYERIHKVQMGVMSPTKLRMKLLGSHGGSIGRVDEAKKSPRASPARLXXXXXXXXHPKN 60
MEYERIHKVQMGVMSPTKLRMKLLGSHGGSIGRVDEAKKSPRASPARL HPKN
Sbjct: 1 MEYERIHKVQMGVMSPTKLRMKLLGSHGGSIGRVDEAKKSPRASPARLDADEDDDDHPKN 60
Query: 61 SLLPQELDEDYPKDQXXXXXXXXXXXHGRAGNGYDSGGFEFYREERXXXXXXXXXXXXGG 120
SLLPQELDEDYPKDQ HGRAGNGYDSGGFEFYREER GG
Sbjct: 61 SLLPQELDEDYPKDQSDSSRSRSDASHGRAGNGYDSGGFEFYREERPPPPPPAAVAVVGG 120
Query: 121 TFFRQVPSKWNDAEKWLAGRHVVHSNPIFSKKXXXXXXXVSGXXXXXXXXXXXXXXXXXX 180
TFFRQVPSKWNDAEKWLAGRHVVHSNPIFSKK VSG
Sbjct: 121 TFFRQVPSKWNDAEKWLAGRHVVHSNPIFSKKAAAAAAAVSGRVAPEASASSSPPSVASR 180
Query: 181 XXXXKRLRVSSEAAAVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRGX 240
KRLRVSSEAAAVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRG
Sbjct: 181 QRQQKRLRVSSEAAAVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRGA 240
Query: 241 XXXXXXXXERELQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKXXXXXXXXH 300
ERELQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEK H
Sbjct: 241 ASASSASSERELQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKRPRPRPRPH 300
Query: 301 SGDGGGEAKKREFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQ 360
SGDGGGEAKKREFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQ
Sbjct: 301 SGDGGGEAKKREFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQ 360
Query: 361 AEQMKARAKQKLSRRLSALSHKAEGKQARVEXXXXXXXXXXXXXVHRIRETGAAPSRLRR 420
AEQMKARAKQKLSRRLSALSHKAEGKQARVE VHRIRETGAAPSRLRR
Sbjct: 361 AEQMKARAKQKLSRRLSALSHKAEGKQARVEARRSRQAARLARQVHRIRETGAAPSRLRR 420
Query: 421 CCSWLFL 427
CCSWLFL
Sbjct: 421 CCSWLFL 427
>Os04g0620200 Remorin, C-terminal region domain containing protein
Length = 284
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 137/251 (54%), Gaps = 32/251 (12%)
Query: 195 AVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRGXXXX----------- 243
+VS+RDVGTEMTP+ S++ SR+GTP G+ TP+ SP CS+P++P G
Sbjct: 44 SVSVRDVGTEMTPIPSQDPSRTGTPLGSMTPTRSPNCSIPSTPVGGRSTASPGDDNTDDG 103
Query: 244 --------XXXXXERELQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKXXXX 295
+ E++++TR+EIAALG+QLGKMNIA+WASK++ EL ASP
Sbjct: 104 PYFNRKGGTNEISDDEMRLKTRKEIAALGIQLGKMNIATWASKEEL-ELVSASPSIADL- 161
Query: 296 XXXXHSGDGGGEAKKREFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMR 355
E K+E+ ARA A++E K RF+++E+KI+ WES QKAK E++M+
Sbjct: 162 -----------ERMKKEYAARAAAYEEAENFKHTARFKKEELKIEAWESLQKAKIESEMK 210
Query: 356 HAEVQAEQMKARAKQKLSRRLSALSHKAEGKQARVEXXXXXXXXXXXXXVHRIRETGAAP 415
E AE++++ A K++ +L AE K+A IR+TG P
Sbjct: 211 RIEEHAEKLRSEAMAKMAEKLEMTRRLAEEKRASANARMNQQAAKAVHKAELIRQTGRVP 270
Query: 416 SRLRRCCSWLF 426
CCS F
Sbjct: 271 GSCILCCSGCF 281
>Os03g0120200 Remorin, C-terminal region domain containing protein
Length = 423
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 126/239 (52%), Gaps = 25/239 (10%)
Query: 195 AVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRGXXXX-------XXXX 247
+VSMRD+GTEMTP+AS+E SR+GTP A++P+ S PT R
Sbjct: 203 SVSMRDMGTEMTPIASQEPSRTGTPIIASSPTSS---RTPTPQRNAEISIGEFGPNKMEM 259
Query: 248 XERELQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKXXXXXXXXHSGDGGGE 307
E ELQ+ TR+EI LG +LGK IA+WASK++ + +
Sbjct: 260 SEEELQMNTRKEIMDLGQRLGKTTIAAWASKEE--------------KSTTSFANVITDK 305
Query: 308 AKKREFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQAEQMKAR 367
A + + EARA W+E K K RFQR+EVKIQ WE+ QKAK EA+M+ E + E +AR
Sbjct: 306 AVEIDREARAADWEEAEKAKYLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIEIKRAR 365
Query: 368 AKQKLSRRLSALSHKAEGKQARVEXXXXXXXXXXXXXVHRIRETGAAPSRLRRCCSWLF 426
+ +LS +L+A HKAE ++ E +IR+TG PS + C W
Sbjct: 366 EQDRLSSKLAAARHKAEARREAAESRKNQEAARTEEQAAQIRKTGHIPSSI-SCWCWCL 423
>Os02g0116800 Remorin, C-terminal region domain containing protein
Length = 510
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 131/243 (53%), Gaps = 29/243 (11%)
Query: 195 AVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRGX-------------X 241
+VSMRD+GTEMTP+AS+E SR+GTP A SP CS PT+PR
Sbjct: 282 SVSMRDMGTEMTPIASQEPSRTGTPVRAT----SPDCSRPTTPRKTIGPNAIGAVIGHGE 337
Query: 242 XXXXXXXERELQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKXXXXXXXXHS 301
E+ELQ++TRREI LG QLGK NIA+WAS ++++
Sbjct: 338 CSNVELSEQELQMKTRREIMLLGTQLGKTNIAAWASNKEEEK-----------DASLSLK 386
Query: 302 GDGGGEAKKREFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQA 361
G ++ ++ E RA AW+E K K RF+R+E+KIQ WE Q+AK EA+MR EV
Sbjct: 387 GVPMDQSTQKVTEIRAAAWEEAEKAKYLARFKREEIKIQAWEDHQRAKIEAEMRKIEVDV 446
Query: 362 EQMKARAKQKLSRRLSALSHKAEGKQARVEXXXXXXXXXXXXXVHRIRETGAAPSRLRRC 421
E+M+ARA+ KL +L++ H A+ K+A E IR TG PS + C
Sbjct: 447 ERMRARAQDKLMSQLASARHTADEKRAAAELKRSRAAAKTAEQADHIRRTGRMPSSI-GC 505
Query: 422 CSW 424
+W
Sbjct: 506 WNW 508
>AK101665
Length = 361
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 111/225 (49%), Gaps = 22/225 (9%)
Query: 195 AVSMRDVGTEMTPMASKEQSRSGTPAGAATP-SLSPLCSVPTSPRGXXXXXXXXXERELQ 253
+V +RD+GTEMTP+ASKE SRS TP A+TP S SP+ S P++P ++
Sbjct: 145 SVCLRDMGTEMTPIASKEPSRSATPLRASTPVSRSPVPSRPSTPGRRRYDVAVGVTAVVE 204
Query: 254 IRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKXXXXXXXXHSGDGGGEAKKRE- 312
RT +A + G A + SG G A+
Sbjct: 205 SRTAEPVAVGSVSDGGGFGGGCAVDESS-------------------SGGFGNHAQSTTT 245
Query: 313 -FEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQAEQMKARAKQK 371
E+RA+AW E + K R++R+E+KIQ WE+ +K K E +M+ E++AEQMKARA +K
Sbjct: 246 GLESRAVAWDEAERAKFTARYKREEMKIQAWENHEKRKAELEMKKIEMKAEQMKARAHEK 305
Query: 372 LSRRLSALSHKAEGKQARVEXXXXXXXXXXXXXVHRIRETGAAPS 416
L+ +L+A AE K+A E IR TG PS
Sbjct: 306 LANKLAAARRMAEEKRATAEAKLNEHAARTTQKADYIRRTGHLPS 350
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,596,284
Number of extensions: 468900
Number of successful extensions: 1424
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1408
Number of HSP's successfully gapped: 6
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)