BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0605400 Os12g0605400|AK068060
         (146 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0605400  Similar to CROC-1-like protein (Fragment)           296   4e-81
Os09g0297100  Similar to CROC-1-like protein (Fragment)           254   2e-68
Os04g0684800  Similar to CROC-1-like protein (Fragment)           225   1e-59
Os03g0712300  Similar to CROC-1-like protein (Fragment)           217   2e-57

>Os12g0605400 Similar to CROC-1-like protein (Fragment)
          Length = 146

 Score =  296 bits (757), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 140/146 (95%), Positives = 140/146 (95%)

Query: 1   MASSGDPSAVVVPRNFRXXXXXXRGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTV 60
           MASSGDPSAVVVPRNFR      RGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTV
Sbjct: 1   MASSGDPSAVVVPRNFRLLEELERGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEA 120
           HEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEA
Sbjct: 61  HEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEA 120

Query: 121 ILTQLKKEMAASHNRKLVQPPEGTFF 146
           ILTQLKKEMAASHNRKLVQPPEGTFF
Sbjct: 121 ILTQLKKEMAASHNRKLVQPPEGTFF 146



>Os09g0297100 Similar to CROC-1-like protein (Fragment)
          Length = 148

 Score =  254 bits (649), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 116/146 (79%), Positives = 128/146 (87%)

Query: 1   MASSGDPSAVVVPRNFRXXXXXXRGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTV 60
           + SSG  S+VVVPRNFR      RGEKGIGDG+VSYGMDDADDIYMRSWTGTIIGPHN+V
Sbjct: 3   LGSSGAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNSV 62

Query: 61  HEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEA 120
           HEGRIYQLKLFCDKDYP++PP+V+FHSRINM+CVN E G VD RKF +L+NW+REYTME 
Sbjct: 63  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTMET 122

Query: 121 ILTQLKKEMAASHNRKLVQPPEGTFF 146
           ILTQLKKEMA   NRKLVQPPEGTFF
Sbjct: 123 ILTQLKKEMATPQNRKLVQPPEGTFF 148



>Os04g0684800 Similar to CROC-1-like protein (Fragment)
          Length = 151

 Score =  225 bits (573), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 115/124 (92%), Gaps = 1/124 (0%)

Query: 24  RGEKGIGDGSVSYGMDD-ADDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPT 82
           RGEKGIGDG+VSYGMDD  DDI+MRSWTGTIIGP N+VHEGRIYQLKLFCDKDYPD+PPT
Sbjct: 28  RGEKGIGDGTVSYGMDDDGDDIFMRSWTGTIIGPLNSVHEGRIYQLKLFCDKDYPDKPPT 87

Query: 83  VKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEAILTQLKKEMAASHNRKLVQPPE 142
           V+FHSRINM CVNP+ GLV+ +KF +L+NW+REYTME ILTQLKKEMAA H+RKLVQPPE
Sbjct: 88  VRFHSRINMPCVNPDTGLVESKKFHMLANWQREYTMENILTQLKKEMAAPHSRKLVQPPE 147

Query: 143 GTFF 146
           GTFF
Sbjct: 148 GTFF 151



>Os03g0712300 Similar to CROC-1-like protein (Fragment)
          Length = 161

 Score =  217 bits (552), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 101/143 (70%), Positives = 114/143 (79%)

Query: 1   MASSGDPSAVVVPRNFRXXXXXXRGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTV 60
           M S G    VVVPRNFR      RGEKGIGDG+VSYGMDDADDIYMRSWTGTIIGP NTV
Sbjct: 1   MGSEGSAGVVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEA 120
           HEGRIYQLKLFCD DYPDRPPTV+F +RINM+CVN E G+V+   F +L NW+RE+TM+ 
Sbjct: 61  HEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMVEPSLFPMLGNWQREHTMQD 120

Query: 121 ILTQLKKEMAASHNRKLVQPPEG 143
           IL  LKKEM+A  NR+L QP +G
Sbjct: 121 ILIGLKKEMSAPQNRRLHQPHDG 143



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,772,269
Number of extensions: 235451
Number of successful extensions: 380
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 4
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)