Os04g0684800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CROC-1-like protein (Fragment).
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Os04g0684800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CROC-1-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.67 | 0.331 | 14.3 | -0.725 | 0.243 | -1.35 | 0.0584 | 0.238 | 0.0803 | 13.4 | 25.9 | 263 | -- | -- |
| 49.73 | 0.328 | 14.3 | -0.683 | 0.236 | -1.37 | -0.00691 | -- | 0.0866 | 13.2 | 26 | 263 | -- | -- |
| 49.66 | 0.328 | 14.3 | -0.721 | 0.238 | -1.36 | -- | 0.205 | 0.0785 | 13.2 | 26.04 | 262 | -- | -- |
| 49.73 | 0.328 | 14.3 | -0.684 | 0.236 | -1.37 | -- | -- | 0.0863 | 13.2 | 26 | 263 | -- | -- |
| 50.91 | 0.332 | 14.3 | -0.81 | -- | -1.39 | -- | 0.69 | 0.0654 | -- | 28.6 | 145 | -- | -- |
| 77.28 | 0.412 | 14.2 | -0.332 | 0.465 | -- | 0.159 | -- | 0.385 | 14.9 | -- | -- | -- | -- |
| 77.37 | 0.412 | 14.2 | -0.328 | 0.465 | -- | -- | -- | 0.386 | 14.8 | -- | -- | -- | -- |
| 51.12 | 0.333 | 14.3 | -0.701 | -- | -1.44 | -- | -- | 0.0779 | -- | 27.93 | 147 | -- | -- |
| 60.85 | 0.363 | 14.2 | -- | 0.248 | -1.09 | -- | -- | 0.223 | 13.8 | 26 | 239 | -- | -- |
| 89.88 | 0.443 | 14.2 | -0.348 | -- | -- | -- | -- | 0.374 | -- | -- | -- | -- | -- |
| 80.2 | 0.419 | 14.2 | -- | 0.471 | -- | -- | -- | 0.423 | 14.8 | -- | -- | -- | -- |
| 62.8 | 0.369 | 14.2 | -- | -- | -1.21 | -- | -- | 0.203 | -- | 28.67 | 123 | -- | -- |
| 93.07 | 0.45 | 14.2 | -- | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 7 | 48.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 18 | 49.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 23 | 49.83 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 32 | 50.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 33 | 50.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 37 | 50.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 45 | 50.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 46 | 50.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 54 | 50.72 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 64 | 50.84 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 66 | 50.85 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 94 | 51.22 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 142 | 51.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 235 | 52.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 244 | 52.61 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 349 | 53.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 358 | 53.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 381 | 53.55 | temperature | 25 | 1440 | < th | dose dependent | sin | 19 | NA |
| 387 | 53.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 481 | 53.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 17 |
| 614 | 54.25 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 657 | 54.33 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 671 | 54.39 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 9 |
| 725 | 54.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 736 | 54.52 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 787 | 54.62 | temperature | 20 | 4320 | < th | dose dependent | sin | 7 | NA |
| 827 | 54.68 | temperature | 20 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 884 | 54.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 893 | 54.79 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 908 | 54.81 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 909 | 54.81 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 911 | 54.81 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 916 | 54.81 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 13 |
| 985 | 54.90 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 1 |