BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0596800 Os12g0596800|AK065760
(486 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0596800 Ubiquitin interacting motif domain containing ... 928 0.0
Os03g0626600 Ubiquitin interacting motif domain containing ... 719 0.0
Os06g0182500 Ubiquitin interacting motif domain containing ... 625 e-179
Os03g0267800 LIM, zinc-binding domain containing protein 483 e-136
>Os12g0596800 Ubiquitin interacting motif domain containing protein
Length = 486
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/486 (92%), Positives = 449/486 (92%)
Query: 1 MGWLNKIFKGSVNRVSRGHYDGSWHEGHSSDNARGAYDESDNEDIDRAIALSLSEEQNKG 60
MGWLNKIFKGSVNRVSRGHYDGSWHEGHSSDNARGAYDESDNEDIDRAIALSLSEEQNKG
Sbjct: 1 MGWLNKIFKGSVNRVSRGHYDGSWHEGHSSDNARGAYDESDNEDIDRAIALSLSEEQNKG 60
Query: 61 KAVDIDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSEPPRELPPILFASSGSRTCA 120
KAVDIDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSEPPRELPPILFASSGSRTCA
Sbjct: 61 KAVDIDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSEPPRELPPILFASSGSRTCA 120
Query: 121 GCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFFHPKCD 180
GCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFFHPKCD
Sbjct: 121 GCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFFHPKCD 180
Query: 181 VCKNFIPTNRNGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCERMEPMDIKYITLDDGRKL 240
VCKNFIPTNRNGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCERMEPMDIKYITLDDGRKL
Sbjct: 181 VCKNFIPTNRNGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCERMEPMDIKYITLDDGRKL 240
Query: 241 CLECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALETEKNGHHL 300
CLECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALETEKNGHHL
Sbjct: 241 CLECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALETEKNGHHL 300
Query: 301 PETRGLCLSEEQIVRTXXXXXXXXXXXXXXDMITAPYKLERRCEVTAILILYGLPRLQTG 360
PETRGLCLSEEQIVRT DMITAPYKLERRCEVTAILILYGLPRLQTG
Sbjct: 301 PETRGLCLSEEQIVRTILRRPIIGPGNRIIDMITAPYKLERRCEVTAILILYGLPRLQTG 360
Query: 361 SILAHEMMHAYLRLKGFRSLSPQVEEGICQVLSHMWLESEIIFGXXXXXXXXXXXXXXXX 420
SILAHEMMHAYLRLKGFRSLSPQVEEGICQVLSHMWLESEIIFG
Sbjct: 361 SILAHEMMHAYLRLKGFRSLSPQVEEGICQVLSHMWLESEIIFGSSIDISATSVASSSSS 420
Query: 421 XXXXXXXKKGAKTEFEKKLGAFIKHQIETDSSEAYGDGFRAANRAVESYGLRSTLNHMKM 480
KKGAKTEFEKKLGAFIKHQIETDSSEAYGDGFRAANRAVESYGLRSTLNHMKM
Sbjct: 421 SSTPTTSKKGAKTEFEKKLGAFIKHQIETDSSEAYGDGFRAANRAVESYGLRSTLNHMKM 480
Query: 481 TGSFPY 486
TGSFPY
Sbjct: 481 TGSFPY 486
>Os03g0626600 Ubiquitin interacting motif domain containing protein
Length = 491
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/491 (72%), Positives = 396/491 (80%), Gaps = 7/491 (1%)
Query: 1 MGWLNKIFKGSVNRVSRGHYDGSWHEGHSSDNARGAYDESDNEDIDRAIALSLSEE-QNK 59
MGWL+KIFKGSVNRVSRGHY+G+ HEGHS+ + + +SD+EDIDRAIALSLSEE Q K
Sbjct: 1 MGWLSKIFKGSVNRVSRGHYNGNTHEGHSAWHTKAYEHDSDHEDIDRAIALSLSEEDQRK 60
Query: 60 GKAVD---IDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSE--PPRELPPILFASS 114
GKAVD ID+ L EDEQLARALQESLN D PPRQN+PV++V SE P +PP +F S+
Sbjct: 61 GKAVDEVDIDHRLHEDEQLARALQESLN-DEPPRQNVPVKDVHSESTPATFMPPYIFPST 119
Query: 115 GSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDF 174
G R CAGCK PIG GRFLSCMDSVWHPQCFRCFAC++PISEYEFA+HE PYH+SCYK+
Sbjct: 120 GLRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKEL 179
Query: 175 FHPKCDVCKNFIPTNRNGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCERMEPMDIKYITL 234
FHPKCDVCKNFIPTN++G IEYRAHPFWMQKYCP+HE D TPRCCSCERMEP D KYITL
Sbjct: 180 FHPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITL 239
Query: 235 DDGRKLCLECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALETE 294
DDGRKLCLECLN+SIMDT ECQ LY+DIQEF+EGLNMKVEQQ+P+LLVERQALNEA+E E
Sbjct: 240 DDGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAE 299
Query: 295 KNGHHLPETRGLCLSEEQIVRTXXXXXXXXXXXXXXDMITAPYKLERRCEVTAILILYGL 354
K GHHL ETRGLCLSEEQIVRT DMIT PYKL RRCEVTAILILYGL
Sbjct: 300 KTGHHLAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGL 359
Query: 355 PRLQTGSILAHEMMHAYLRLKGFRSLSPQVEEGICQVLSHMWLESEIIFGXXXXXXXXXX 414
PRL TGSILAHEMMHAYLRLKG+++L P+VEEGICQVL+HMWLESEI G
Sbjct: 360 PRLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLAHMWLESEITSGSSSIIASIAA 419
Query: 415 XXXXXXXXXXXXXKKGAKTEFEKKLGAFIKHQIETDSSEAYGDGFRAANRAVESYGLRST 474
KKG +T+FEKKLG F KHQIETD S+ YGDGFR +AVE YGLR T
Sbjct: 420 SSSSSSSSSAPSSKKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVERYGLRKT 479
Query: 475 LNHMKMTGSFP 485
L+HMK+TG FP
Sbjct: 480 LDHMKLTGVFP 490
>Os06g0182500 Ubiquitin interacting motif domain containing protein
Length = 486
Score = 625 bits (1611), Expect = e-179, Method: Compositional matrix adjust.
Identities = 315/495 (63%), Positives = 369/495 (74%), Gaps = 18/495 (3%)
Query: 1 MGWLNKIFKGSVNRVSRGHYDGS------WHEGHSSDNARGAYDESDNEDIDRAIALSL- 53
MGWL K F+GS +++S G Y W+ +S E DNEDI RAI+LSL
Sbjct: 1 MGWLTKFFRGSTHKISEGQYHSKPAEETIWNGPSNSAVVTDVPSEFDNEDIARAISLSLL 60
Query: 54 SEEQNKGKAVDIDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSEPPRELPPILFA- 112
EEQ K KA++ D +LEEDEQLARA+QESLN +SPPR EN + P+ F
Sbjct: 61 EEEQRKAKAIEKDMHLEEDEQLARAIQESLNVESPPRAR---ENGNANGGNMYQPLPFMF 117
Query: 113 SSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYK 172
SSG RTCAGC + IGHGRFLSCM +VWHP+CFRC ACN+PI +YEF+M + PYHK+CYK
Sbjct: 118 SSGFRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYK 177
Query: 173 DFFHPKCDVCKNFIPTNRNGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCERMEPMDIKYI 232
+ FHPKCDVCK FIPTN NGLIEYRAHPFW+QKYCPSHE DGTPRCCSCERMEP + +Y+
Sbjct: 178 ERFHPKCDVCKQFIPTNMNGLIEYRAHPFWLQKYCPSHEVDGTPRCCSCERMEPRESRYV 237
Query: 233 TLDDGRKLCLECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALE 292
LDDGRKLCLECL+S++MDT ECQ LY++IQEF+EGLNMKVEQQVP+LLVERQALNEA+E
Sbjct: 238 LLDDGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAME 297
Query: 293 TEKNG-HHLPETRGLCLSEEQIVRTXXXXXXXXXXXXXXDMITAPYKLERRCEVTAILIL 351
EK G HHLPETRGLCLSEEQ V T +MIT PY+L RRCEVTAILIL
Sbjct: 298 GEKTGHHHLPETRGLCLSEEQTVST-ILRRPRMAGNKVMEMITEPYRLTRRCEVTAILIL 356
Query: 352 YGLPRLQTGSILAHEMMHAYLRLKGFRSLSPQVEEGICQVLSHMWLESEIIFGXXXXXXX 411
YGLPRL TGSILAHEMMHA+LRLKG+R+LSP VEEGICQVL+HMW+ESEII
Sbjct: 357 YGLPRLLTGSILAHEMMHAWLRLKGYRTLSPDVEEGICQVLAHMWIESEII-----AGSG 411
Query: 412 XXXXXXXXXXXXXXXXKKGAKTEFEKKLGAFIKHQIETDSSEAYGDGFRAANRAVESYGL 471
KKG +++FE+KLG F KHQIE+D+S AYGDGFRA NRAV YGL
Sbjct: 412 SNGASTSSSSSASTSSKKGGRSQFERKLGDFFKHQIESDTSMAYGDGFRAGNRAVLQYGL 471
Query: 472 RSTLNHMKMTGSFPY 486
+ TL H+++TG+FP+
Sbjct: 472 KRTLEHIRLTGTFPF 486
>Os03g0267800 LIM, zinc-binding domain containing protein
Length = 501
Score = 483 bits (1244), Expect = e-136, Method: Compositional matrix adjust.
Identities = 261/500 (52%), Positives = 321/500 (64%), Gaps = 34/500 (6%)
Query: 1 MGWLNKIFKGSVN--------RVSRGHYDGSWHEGHSSDNARGAYDES---DNEDIDRAI 49
M WL KG+ + RV+ G W E R +E +NE++D A+
Sbjct: 20 MKWLCAFLKGTKDGEANRRRPRVTAGEETTLWEE-----PVRPKKEEPPRHNNEEMDHAL 74
Query: 50 ALSLSEEQNKGKAVDIDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSEPPRELPP- 108
AL+L+++ K + D E DE+LARA+Q+SLN + P +P P
Sbjct: 75 ALALADDAKNTKERNHDKG-ENDEELARAIQDSLNMN------------PYQPYNPCAPS 121
Query: 109 -ILFASSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYH 167
S G R C GCK+ IGHG +LSC+ WHPQCFRC +C PI E EF + PYH
Sbjct: 122 QTQARSRGYRVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDPYH 181
Query: 168 KSCYKDFFHPKCDVCKNFIPTNRNGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCERMEPM 227
K CYK+ HPKCDVC FIPTNR GLIEYRAHPFW QKYCP HE D TPRCCSCE+MEP
Sbjct: 182 KLCYKELHHPKCDVCLQFIPTNRTGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKMEPR 241
Query: 228 DIKYITLDDGRKLCLECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQAL 287
+ KY++L DGR LC+ECL+S+IMDT ECQ LY I++++EG+NMK++QQ+P+LLVERQAL
Sbjct: 242 NTKYMSLGDGRSLCMECLDSAIMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQAL 301
Query: 288 NEALETEKNG-HHLPETRGLCLSEEQIVRTXXXXXXXXXXXXXXDMITAPYKLERRCEVT 346
NEA+E E G HH+PETRGLCLSEEQ V T DM T P KL RRCEVT
Sbjct: 302 NEAMEGESKGPHHMPETRGLCLSEEQTV-TSILRRPRIGANRLLDMKTQPQKLTRRCEVT 360
Query: 347 AILILYGLPRLQTGSILAHEMMHAYLRLKGFRSLSPQVEEGICQVLSHMWLESEIIFGXX 406
AIL+L+GLPRL TGSILAHE+MH +LRLKG+R+L ++EEGICQV+S++WLESEI+
Sbjct: 361 AILVLFGLPRLLTGSILAHELMHGWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPSTS 420
Query: 407 XX-XXXXXXXXXXXXXXXXXXXKKGAKTEFEKKLGAFIKHQIETDSSEAYGDGFRAANRA 465
KKG + EKKLG F HQI D+S AYGDGFRAA A
Sbjct: 421 RYGQASTSYASSSSSSCRPPPSKKGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYAA 480
Query: 466 VESYGLRSTLNHMKMTGSFP 485
V YGLR +LNH+++TG FP
Sbjct: 481 VNKYGLRQSLNHIRLTGGFP 500
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,712,827
Number of extensions: 717284
Number of successful extensions: 2154
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2131
Number of HSP's successfully gapped: 4
Length of query: 486
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 381
Effective length of database: 11,553,331
Effective search space: 4401819111
Effective search space used: 4401819111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)