Os03g0267800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : LIM, zinc-binding domain containing protein.
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Os03g0267800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : LIM, zinc-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.8 | 0.273 | 10.8 | -1.22 | 0.882 | 0.411 | -0.167 | 2.51 | -0.416 | 5.13 | 0.7174 | 4409 | -- | -- |
| 37.65 | 0.286 | 10.7 | -0.782 | 0.818 | 0.217 | -0.0281 | -- | -0.313 | 5.08 | 14.69 | 3292 | -- | -- |
| 33.66 | 0.27 | 10.8 | -1.2 | 0.902 | 0.488 | -- | 2.66 | -0.42 | 5.15 | 0.2485 | 4386 | -- | -- |
| 37.62 | 0.286 | 10.7 | -0.794 | 0.825 | 0.241 | -- | -- | -0.308 | 5.12 | 12.54 | 3289 | -- | -- |
| 50.65 | 0.331 | 10.9 | -1.14 | -- | 1.47 | -- | 4.57 | -0.382 | -- | 0.06764 | 4902 | -- | -- |
| 38.31 | 0.29 | 10.7 | -0.784 | 0.893 | -- | -0.0469 | -- | -0.345 | 4.99 | -- | -- | -- | -- |
| 38.32 | 0.29 | 10.7 | -0.784 | 0.892 | -- | -- | -- | -0.345 | 4.98 | -- | -- | -- | -- |
| 41.72 | 0.301 | 10.7 | -0.728 | -- | 0.932 | -- | -- | -0.296 | -- | 2.43 | 612 | -- | -- |
| 53.46 | 0.342 | 10.7 | -- | 0.847 | 0.236 | -- | -- | -0.259 | 5.96 | 26.55 | 1674 | -- | -- |
| 80.19 | 0.418 | 10.7 | -0.752 | -- | -- | -- | -- | -0.322 | -- | -- | -- | -- | -- |
| 54.53 | 0.345 | 10.7 | -- | 0.878 | -- | -- | -- | -0.258 | 5.01 | -- | -- | -- | -- |
| 54.28 | 0.343 | 10.7 | -- | -- | 0.992 | -- | -- | -0.236 | -- | 1.199e-05 | 633 | -- | -- |
| 95.09 | 0.455 | 10.7 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.70 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 3 | 32.76 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 4 | 32.78 | humidity | 60 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 10 | 32.81 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 15 | 32.82 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 22 | 32.87 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 60 | 32.92 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 62 | 32.92 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 77 | 32.94 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 79 | 32.95 | humidity | 50 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 88 | 32.95 | humidity | 50 | 43200 | > th | dose independent | rect. | 12 | 22 |
| 91 | 32.95 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 95 | 32.96 | humidity | 50 | 43200 | > th | dose independent | sin | 19 | NA |
| 97 | 32.96 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 98 | 32.96 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 119 | 32.97 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 120 | 32.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 173 | 32.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 22 |
| 194 | 32.98 | humidity | 50 | 43200 | < th | dose independent | sin | 18 | NA |
| 195 | 32.98 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 199 | 32.98 | humidity | 50 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 210 | 32.98 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 248 | 32.98 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 259 | 32.99 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 260 | 32.99 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 289 | 32.99 | humidity | 50 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 345 | 33.00 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 402 | 33.01 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 403 | 33.01 | humidity | 50 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 415 | 33.01 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 571 | 33.09 | humidity | 50 | 43200 | < th | dose dependent | sin | 15 | NA |
| 576 | 33.09 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 586 | 33.10 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 14 | NA |
| 604 | 33.11 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 627 | 33.12 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 682 | 33.14 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 705 | 33.15 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 747 | 33.17 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 753 | 33.17 | wind | 3 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 893 | 33.20 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 895 | 33.20 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 20 | NA |
| 928 | 33.20 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 8 | 16 |
| 989 | 33.21 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 3 |