BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0267800 Os03g0267800|AK069586
(501 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0267800 LIM, zinc-binding domain containing protein 944 0.0
Os06g0182500 Ubiquitin interacting motif domain containing ... 532 e-151
Os12g0596800 Ubiquitin interacting motif domain containing ... 508 e-144
Os03g0626600 Ubiquitin interacting motif domain containing ... 498 e-141
>Os03g0267800 LIM, zinc-binding domain containing protein
Length = 501
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/501 (91%), Positives = 459/501 (91%)
Query: 1 MAYSSRSCDQCSHERRSGFMKWLCAFLKGTKDGEANRRRPRVTAGEETTLWXXXXXXXXX 60
MAYSSRSCDQCSHERRSGFMKWLCAFLKGTKDGEANRRRPRVTAGEETTLW
Sbjct: 1 MAYSSRSCDQCSHERRSGFMKWLCAFLKGTKDGEANRRRPRVTAGEETTLWEEPVRPKKE 60
Query: 61 XXXXHNNEEMXXXXXXXXXXXXKNTKERNHDKGENDEELARAIQDSLNMNPYQPYNPCAP 120
HNNEEM KNTKERNHDKGENDEELARAIQDSLNMNPYQPYNPCAP
Sbjct: 61 EPPRHNNEEMDHALALALADDAKNTKERNHDKGENDEELARAIQDSLNMNPYQPYNPCAP 120
Query: 121 SQTQARSRGYRVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDPY 180
SQTQARSRGYRVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDPY
Sbjct: 121 SQTQARSRGYRVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDPY 180
Query: 181 HKLCYKELHHPKCDVCLQFIPTNRTGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKMEP 240
HKLCYKELHHPKCDVCLQFIPTNRTGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKMEP
Sbjct: 181 HKLCYKELHHPKCDVCLQFIPTNRTGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKMEP 240
Query: 241 RNTKYMSLGDGRSLCMECLDSAIMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQA 300
RNTKYMSLGDGRSLCMECLDSAIMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQA
Sbjct: 241 RNTKYMSLGDGRSLCMECLDSAIMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQA 300
Query: 301 LNEAMEGESKGPHHMPETRGLCLSEEQTVTSILRRPRIGANRLLDMKTQPQKLTRRCEVT 360
LNEAMEGESKGPHHMPETRGLCLSEEQTVTSILRRPRIGANRLLDMKTQPQKLTRRCEVT
Sbjct: 301 LNEAMEGESKGPHHMPETRGLCLSEEQTVTSILRRPRIGANRLLDMKTQPQKLTRRCEVT 360
Query: 361 AILVLFGLPRLLTGSILAHELMHGWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPSTS 420
AILVLFGLPRLLTGSILAHELMHGWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPSTS
Sbjct: 361 AILVLFGLPRLLTGSILAHELMHGWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPSTS 420
Query: 421 RYGQAXXXXXXXXXXXXXXXXXKKGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYAA 480
RYGQA KKGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYAA
Sbjct: 421 RYGQASTSYASSSSSSCRPPPSKKGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYAA 480
Query: 481 VNKYGLRQSLNHIRLTGGFPV 501
VNKYGLRQSLNHIRLTGGFPV
Sbjct: 481 VNKYGLRQSLNHIRLTGGFPV 501
>Os06g0182500 Ubiquitin interacting motif domain containing protein
Length = 486
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/423 (60%), Positives = 312/423 (73%), Gaps = 28/423 (6%)
Query: 94 ENDEELARAIQDSLNM---------------NPYQPYNPCAPSQTQARSRGYRVCGGCKH 138
E DE+LARAIQ+SLN+ N YQP S G+R C GC
Sbjct: 77 EEDEQLARAIQESLNVESPPRARENGNANGGNMYQPL-------PFMFSSGFRTCAGCHS 129
Query: 139 EIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDPYHKLCYKELHHPKCDVCLQ 198
EIGHG +LSC+G WHP+CFRC +C PI + EF++ G PYHK CYKE HPKCDVC Q
Sbjct: 130 EIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPKCDVCKQ 189
Query: 199 FIPTNRTGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKMEPRNTKYMSLGDGRSLCMEC 258
FIPTN GLIEYRAHPFW QKYCP HE D TPRCCSCE+MEPR ++Y+ L DGR LC+EC
Sbjct: 190 FIPTNMNGLIEYRAHPFWLQKYCPSHEVDGTPRCCSCERMEPRESRYVLLDDGRKLCLEC 249
Query: 259 LDSAIMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESKGPHHMPET 318
LDSA+MDT ECQPLY I+++YEG+NMK++QQ+P+LLVERQALNEAMEGE G HH+PET
Sbjct: 250 LDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKTGHHHLPET 309
Query: 319 RGLCLSEEQTVTSILRRPRIGANRLLDMKTQPQKLTRRCEVTAILVLFGLPRLLTGSILA 378
RGLCLSEEQTV++ILRRPR+ N++++M T+P +LTRRCEVTAIL+L+GLPRLLTGSILA
Sbjct: 310 RGLCLSEEQTVSTILRRPRMAGNKVMEMITEPYRLTRRCEVTAILILYGLPRLLTGSILA 369
Query: 379 HELMHGWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPSTSRYGQAXXXXXXXXXXXXX 438
HE+MH WLRLKGYR L ++EEGICQV++++W+ESEI+ +
Sbjct: 370 HEMMHAWLRLKGYRTLSPDVEEGICQVLAHMWIESEII------AGSGSNGASTSSSSSA 423
Query: 439 XXXXKKGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYAAVNKYGLRQSLNHIRLTGG 498
KKGG S E+KLG+FF HQI +DTS AYGDGFRA AV +YGL+++L HIRLTG
Sbjct: 424 STSSKKGGRSQFERKLGDFFKHQIESDTSMAYGDGFRAGNRAVLQYGLKRTLEHIRLTGT 483
Query: 499 FPV 501
FP
Sbjct: 484 FPF 486
>Os12g0596800 Ubiquitin interacting motif domain containing protein
Length = 486
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/497 (52%), Positives = 321/497 (64%), Gaps = 28/497 (5%)
Query: 20 MKWLCAFLKGTKDGEANRRRPRVTAGEETTLWXX--XXXXXXXXXXXHNNEEMXXXXXXX 77
M WL KG+ + RV+ G W +NE++
Sbjct: 1 MGWLNKIFKGSVN--------RVSRGHYDGSWHEGHSSDNARGAYDESDNEDIDRAIALS 52
Query: 78 XXXXXKNTKERNHDKG-ENDEELARAIQDSLNMN------------PYQPYNPCAPSQTQ 124
K + D E DE+LARA+Q+SLN + P +P P
Sbjct: 53 LSEEQNKGKAVDIDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSEPPRELPP--IL 110
Query: 125 ARSRGYRVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDPYHKLC 184
S G R C GCK+ IGHG +LSC+ WHPQCFRC +C PI E EF + PYHK C
Sbjct: 111 FASSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSC 170
Query: 185 YKELHHPKCDVCLQFIPTNRTGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKMEPRNTK 244
YK+ HPKCDVC FIPTNR GLIEYRAHPFW QKYCP HE D TPRCCSCE+MEP + K
Sbjct: 171 YKDFFHPKCDVCKNFIPTNRNGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCERMEPMDIK 230
Query: 245 YMSLGDGRSLCMECLDSAIMDTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEA 304
Y++L DGR LC+ECL+S+IMDT ECQ LY I++++EG+NMK++QQ+P+LLVERQALNEA
Sbjct: 231 YITLDDGRKLCLECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEA 290
Query: 305 MEGESKGPHHMPETRGLCLSEEQTVTSILRRPRIG-ANRLLDMKTQPQKLTRRCEVTAIL 363
+E E G HH+PETRGLCLSEEQ V +ILRRP IG NR++DM T P KL RRCEVTAIL
Sbjct: 291 LETEKNG-HHLPETRGLCLSEEQIVRTILRRPIIGPGNRIIDMITAPYKLERRCEVTAIL 349
Query: 364 VLFGLPRLLTGSILAHELMHGWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPSTSRYG 423
+L+GLPRL TGSILAHE+MH +LRLKG+R+L ++EEGICQV+S++WLESEI+ +S
Sbjct: 350 ILYGLPRLQTGSILAHEMMHAYLRLKGFRSLSPQVEEGICQVLSHMWLESEIIFGSS-ID 408
Query: 424 QAXXXXXXXXXXXXXXXXXKKGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYAAVNK 483
+ KKG + EKKLG F HQI D+S AYGDGFRAA AV
Sbjct: 409 ISATSVASSSSSSSTPTTSKKGAKTEFEKKLGAFIKHQIETDSSEAYGDGFRAANRAVES 468
Query: 484 YGLRQSLNHIRLTGGFP 500
YGLR +LNH+++TG FP
Sbjct: 469 YGLRSTLNHMKMTGSFP 485
>Os03g0626600 Ubiquitin interacting motif domain containing protein
Length = 491
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/417 (59%), Positives = 303/417 (72%), Gaps = 14/417 (3%)
Query: 96 DEELARAIQDSLNMNPYQPYNPCAPSQTQAR-----------SRGYRVCGGCKHEIGHGH 144
DE+LARA+Q+SLN P + P +++ S G RVC GCK IG G
Sbjct: 76 DEQLARALQESLNDEPPRQNVPVKDVHSESTPATFMPPYIFPSTGLRVCAGCKTPIGQGR 135
Query: 145 YLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDPYHKLCYKELHHPKCDVCLQFIPTNR 204
+LSC+ WHPQCFRC +C PI E EF + +PYH+ CYKEL HPKCDVC FIPTN+
Sbjct: 136 FLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKELFHPKCDVCKNFIPTNK 195
Query: 205 TGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKMEPRNTKYMSLGDGRSLCMECLDSAIM 264
G IEYRAHPFW QKYCP HE DRTPRCCSCE+MEP+++KY++L DGR LC+ECL+++IM
Sbjct: 196 DGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITLDDGRKLCLECLNTSIM 255
Query: 265 DTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESKGPHHMPETRGLCLS 324
DT ECQPLY I+++YEG+NMK++QQIP+LLVERQALNEAME E G HH+ ETRGLCLS
Sbjct: 256 DTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAEKTG-HHLAETRGLCLS 314
Query: 325 EEQTVTSILRRPRIG-ANRLLDMKTQPQKLTRRCEVTAILVLFGLPRLLTGSILAHELMH 383
EEQ V +ILRRP IG N+++DM T P KL RRCEVTAIL+L+GLPRLLTGSILAHE+MH
Sbjct: 315 EEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGLPRLLTGSILAHEMMH 374
Query: 384 GWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPSTSRYGQAXXXXXXXXXXXXXXXXXK 443
+LRLKGY+ L ++EEGICQV++++WLESEI S S A K
Sbjct: 375 AYLRLKGYQTLDPKVEEGICQVLAHMWLESEIT-SGSSSIIASIAASSSSSSSSSAPSSK 433
Query: 444 KGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYAAVNKYGLRQSLNHIRLTGGFP 500
KG + EKKLGEFF HQI D S YGDGFR AV +YGLR++L+H++LTG FP
Sbjct: 434 KGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVERYGLRKTLDHMKLTGVFP 490
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,126,835
Number of extensions: 704820
Number of successful extensions: 1305
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1290
Number of HSP's successfully gapped: 4
Length of query: 501
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 396
Effective length of database: 11,553,331
Effective search space: 4575119076
Effective search space used: 4575119076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)