BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0589100 Os12g0589100|AK073627
(240 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0589100 Similar to Adenine phosphoribosyltransferase 342 1e-94
Os07g0484800 Similar to Adenine phosphoribosyltransferase (... 273 7e-74
Os12g0592400 256 7e-69
Os04g0504000 Similar to Adenine phosphoribosyltransferase 2... 243 9e-65
Os02g0613900 Similar to Adenine phosphoribosyltransferase 2... 235 2e-62
>Os12g0589100 Similar to Adenine phosphoribosyltransferase
Length = 240
Score = 342 bits (878), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 179/205 (87%), Positives = 179/205 (87%)
Query: 36 VRLGSLGGKQXXXXXXXXXXXXXXXXXXXXXXXXXXIASTIRVIPDFPKPGIMFQDITTM 95
VRLGSLGGKQ IASTIRVIPDFPKPGIMFQDITTM
Sbjct: 36 VRLGSLGGKQRRGHRGVAVMAAAAAGGGGFEARVARIASTIRVIPDFPKPGIMFQDITTM 95
Query: 96 LLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIFGPPIALALGAKFVPLRKPKKLPGE 155
LLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIFGPPIALALGAKFVPLRKPKKLPGE
Sbjct: 96 LLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIFGPPIALALGAKFVPLRKPKKLPGE 155
Query: 156 VISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIATGGTLSAAVKLIERAGAEVVECAC 215
VISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIATGGTLSAAVKLIERAGAEVVECAC
Sbjct: 156 VISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIATGGTLSAAVKLIERAGAEVVECAC 215
Query: 216 VIELPELKGRDKLGNKPVFVLVKAD 240
VIELPELKGRDKLGNKPVFVLVKAD
Sbjct: 216 VIELPELKGRDKLGNKPVFVLVKAD 240
>Os07g0484800 Similar to Adenine phosphoribosyltransferase (EC 2.4.2.7)-like
protein
Length = 187
Score = 273 bits (698), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 130/169 (76%), Positives = 153/169 (90%)
Query: 72 IASTIRVIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIF 131
IASTIRV+P+FPKPGIMFQDITT+LL P F+DTI+LFVERY KGI+V+AGVEARGFIF
Sbjct: 18 IASTIRVVPNFPKPGIMFQDITTLLLNPPVFKDTIDLFVERYTGKGISVVAGVEARGFIF 77
Query: 132 GPPIALALGAKFVPLRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIA 191
GPPIALA+GAKF+PLRKP KLPGEV+S+EY LEYG D +EMHVGAV+P RA+VVDDL+A
Sbjct: 78 GPPIALAIGAKFIPLRKPNKLPGEVMSKEYELEYGADCLEMHVGAVQPGERALVVDDLVA 137
Query: 192 TGGTLSAAVKLIERAGAEVVECACVIELPELKGRDKLGNKPVFVLVKAD 240
TGGTL AA+ L+ERAGAEVVECACVIELPELKGR++L KP++VLV++
Sbjct: 138 TGGTLCAAIVLLERAGAEVVECACVIELPELKGRERLNGKPLYVLVESH 186
>Os12g0592400
Length = 188
Score = 256 bits (655), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 125/163 (76%), Positives = 142/163 (87%)
Query: 78 VIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIFGPPIAL 137
V P FPKPGI FQD+T + KP+ FRD I LFVERYK KG+T++AG+EARGF F P IAL
Sbjct: 26 VFPGFPKPGISFQDVTGIFHKPEVFRDAIGLFVERYKGKGVTLVAGIEARGFFFAPTIAL 85
Query: 138 ALGAKFVPLRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIATGGTLS 197
+GAKFVPLRKP+KLPGEVISEEYSLEYGTDKIEM +GAVEPN RA++VDDLIATGGTL
Sbjct: 86 EVGAKFVPLRKPRKLPGEVISEEYSLEYGTDKIEMQIGAVEPNDRAIIVDDLIATGGTLC 145
Query: 198 AAVKLIERAGAEVVECACVIELPELKGRDKLGNKPVFVLVKAD 240
AAVKL+ERAGAEVVECACV+EL ELKGR+KLG PVFVLV+ +
Sbjct: 146 AAVKLLERAGAEVVECACVVELQELKGREKLGKIPVFVLVETN 188
>Os04g0504000 Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT)
Length = 212
Score = 243 bits (620), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 116/168 (69%), Positives = 140/168 (83%)
Query: 72 IASTIRVIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIF 131
I+ IRV+P FPKPGIMF DIT +LL+P AF+D +++FVERY+ I +AG+EARGFIF
Sbjct: 43 ISDAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIF 102
Query: 132 GPPIALALGAKFVPLRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIA 191
GP IALA+GAKF+PLRKPKKLPGEVISE Y LEYGTD +EMHVGA EP R VVVDDL+A
Sbjct: 103 GPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEPGERVVVVDDLVA 162
Query: 192 TGGTLSAAVKLIERAGAEVVECACVIELPELKGRDKLGNKPVFVLVKA 239
TGGTL AA+KL+ERAGA+VVECAC+I LP+ K KL KPV++LV++
Sbjct: 163 TGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVES 210
>Os02g0613900 Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT)
Length = 213
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/168 (66%), Positives = 139/168 (82%)
Query: 72 IASTIRVIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIF 131
I+ IRV+P FPK GIMF DIT +LL+P F+D +++FVERY+ I +AG+EARGFIF
Sbjct: 41 ISDAIRVVPHFPKQGIMFNDITPLLLRPGVFKDAVDIFVERYRGMAIAAVAGIEARGFIF 100
Query: 132 GPPIALALGAKFVPLRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIA 191
GP IALA+GAKF+PLRKPKKLPGEVISE Y LEYGTD ++MHVGA+EP R ++VDDL+A
Sbjct: 101 GPAIALAIGAKFIPLRKPKKLPGEVISETYVLEYGTDCLQMHVGAIEPGERVLIVDDLVA 160
Query: 192 TGGTLSAAVKLIERAGAEVVECACVIELPELKGRDKLGNKPVFVLVKA 239
TGGTL AA++L+ERAGA+VVECAC+I LP+ K KL KPV+VLV++
Sbjct: 161 TGGTLCAAIRLLERAGADVVECACLIGLPKFKDFYKLNGKPVYVLVES 208
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.142 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,089,610
Number of extensions: 234159
Number of successful extensions: 494
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 5
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)