Os02g0613900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT).
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Os02g0613900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 523.54 | 1.08 | 9.58 | -1.95 | 1.08 | 3.48 | -2.53 | -2.51 | -1.64 | 14.3 | 21 | 143 | 19.8 | 8.97 |
| 525.64 | 1.07 | 9.55 | -1.71 | 1.08 | 3.38 | -2.31 | -- | -1.59 | 14.4 | 21.31 | 161 | 19.8 | 8.86 |
| 541.77 | 1.08 | 9.58 | -1.89 | 1.09 | 3.57 | -- | -0.894 | -1.65 | 14 | 21.32 | 155 | 19.8 | 8.77 |
| 541.55 | 1.08 | 9.57 | -1.78 | 1.09 | 3.59 | -- | -- | -1.62 | 13.9 | 21.36 | 164 | 19.7 | 8.7 |
| 581.28 | 1.12 | 9.54 | -1.61 | -- | 2.91 | -- | 0.0752 | -1.53 | -- | 22.04 | 139 | 19.8 | 8.9 |
| 711.43 | 1.25 | 9.46 | -1.39 | 0.365 | -- | 2.88 | -- | -1.17 | 2.71 | -- | -- | -- | -- |
| 736.09 | 1.27 | 9.48 | -1.46 | 0.443 | -- | -- | -- | -1.19 | 0.155 | -- | -- | -- | -- |
| 580.57 | 1.12 | 9.54 | -1.68 | -- | 2.68 | -- | -- | -1.47 | -- | 21.92 | 147 | 19.8 | 8.67 |
| 622.98 | 1.16 | 9.54 | -- | 0.989 | 3.32 | -- | -- | -1.42 | 13.8 | 21.21 | 159 | 19.7 | 8.61 |
| 748.47 | 1.28 | 9.47 | -1.44 | -- | -- | -- | -- | -1.18 | -- | -- | -- | -- | -- |
| 792.17 | 1.32 | 9.44 | -- | 0.424 | -- | -- | -- | -1.02 | 24 | -- | -- | -- | -- |
| 656.16 | 1.19 | 9.5 | -- | -- | 2.6 | -- | -- | -1.3 | -- | 21.79 | 134 | 19.9 | 8.48 |
| 803.5 | 1.32 | 9.44 | -- | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 537.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 20 | 566.87 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 27 | 568.10 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 9 |
| 32 | 569.15 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 14 |
| 41 | 571.28 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 17 |
| 42 | 571.36 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 8 |
| 52 | 572.76 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 54 | 572.82 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 12 |
| 107 | 579.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 111 | 579.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 113 | 579.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 15 |
| 148 | 579.56 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 164 | 579.73 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 165 | 579.76 | radiation | 1 | 43200 | < th | dose independent | sin | 1 | NA |
| 168 | 579.82 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 171 | 579.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 173 | 579.87 | radiation | 1 | 43200 | > th | dose independent | sin | 2 | NA |
| 176 | 579.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 184 | 579.96 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 187 | 579.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 195 | 580.00 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 210 | 580.06 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 242 | 580.10 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 246 | 580.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 255 | 580.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 267 | 580.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 279 | 580.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 301 | 580.26 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 318 | 580.32 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 370 | 580.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 373 | 580.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 645 | 580.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 14 |
| 650 | 580.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 11 |
| 652 | 580.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 18 |
| 682 | 581.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 701 | 581.20 | radiation | 1 | 43200 | < th | dose dependent | sin | 0 | NA |
| 729 | 581.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 743 | 581.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 808 | 581.52 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 809 | 581.53 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 821 | 581.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 21 |
| 822 | 581.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 834 | 581.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 21 |
| 857 | 581.56 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 874 | 581.59 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 18 |
| 923 | 581.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 931 | 581.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 937 | 581.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 963 | 581.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 966 | 582.00 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 971 | 582.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 973 | 582.02 | humidity | 80 | 43200 | > th | dose dependent | rect. | 7 | 18 |
| 991 | 582.06 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 15 |