BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0613900 Os02g0613900|AK070784
(213 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80050.1 | chr1:30111708-30113261 REVERSE LENGTH=193 255 1e-68
AT5G11160.1 | chr5:3550774-3551986 FORWARD LENGTH=192 249 9e-67
AT4G12440.2 | chr4:7376268-7380120 FORWARD LENGTH=183 244 3e-65
AT4G22570.1 | chr4:11882310-11885250 REVERSE LENGTH=184 243 4e-65
AT1G27450.3 | chr1:9532042-9533807 FORWARD LENGTH=285 219 8e-58
>AT1G80050.1 | chr1:30111708-30113261 REVERSE LENGTH=193
Length = 192
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/177 (71%), Positives = 146/177 (82%)
Query: 37 RLQGISDAIRVVPHFPKQGIMFNDITPLLLRPGVFKDAVDIFVERYRGMAIAAVAGIEAR 96
RL+ ISDAIRV+PHFPK GIMF DIT LLL P FK VDIFV+RY+ M I+ VAG+EAR
Sbjct: 13 RLKAISDAIRVIPHFPKTGIMFQDITTLLLDPVAFKHVVDIFVDRYKHMNISLVAGVEAR 72
Query: 97 GFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYVLEYGTDCLQMHVGAIEPGERVLIVD 156
GFIFGP IALAIGAKF+PLRKP KLPG VISE Y LEYG DCL+M V A++ ER LI+D
Sbjct: 73 GFIFGPPIALAIGAKFVPLRKPGKLPGRVISEEYELEYGRDCLEMSVEAVKSEERALIID 132
Query: 157 DLVATGGTLCAAIRLLERAGADVVECACLIGLPKFKDFYKLNGKPVYVLVESREYEK 213
DLVATGGTL A+I LLERAGA+VVECAC++GLPKFK KL GKP+YVLVE ++++
Sbjct: 133 DLVATGGTLSASINLLERAGAEVVECACVVGLPKFKGQCKLKGKPLYVLVEPNQFDE 189
>AT5G11160.1 | chr5:3550774-3551986 FORWARD LENGTH=192
Length = 191
Score = 249 bits (635), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 123/171 (71%), Positives = 145/171 (84%)
Query: 37 RLQGISDAIRVVPHFPKQGIMFNDITPLLLRPGVFKDAVDIFVERYRGMAIAAVAGIEAR 96
RL+ IS AIRVVP+FPK+GIMF DIT LLL FK +DIFV+RY+ M I+ VAG+EAR
Sbjct: 13 RLEAISAAIRVVPNFPKKGIMFQDITTLLLDHKAFKHTIDIFVDRYKDMQISVVAGVEAR 72
Query: 97 GFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYVLEYGTDCLQMHVGAIEPGERVLIVD 156
GF+FGP+IALAIGAKFIPLRKP KLPG+VISE+Y LEYG D L+MHVGA+EP ERV+I+D
Sbjct: 73 GFLFGPSIALAIGAKFIPLRKPGKLPGKVISESYELEYGHDRLEMHVGAVEPRERVIIID 132
Query: 157 DLVATGGTLCAAIRLLERAGADVVECACLIGLPKFKDFYKLNGKPVYVLVE 207
DLVATGGTL AA+ LLE GA+VVECAC+IGLP+ K +KL GKP+YVLVE
Sbjct: 133 DLVATGGTLSAAMSLLESQGAEVVECACVIGLPEVKGQHKLKGKPLYVLVE 183
>AT4G12440.2 | chr4:7376268-7380120 FORWARD LENGTH=183
Length = 182
Score = 244 bits (622), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/173 (68%), Positives = 141/173 (81%)
Query: 37 RLQGISDAIRVVPHFPKQGIMFNDITPLLLRPGVFKDAVDIFVERYRGMAIAAVAGIEAR 96
R+ GI IRVVP FPK+GIMF DIT LLL P FKD +D+FVERYR M I+ VAGIEAR
Sbjct: 10 RIDGIKTKIRVVPDFPKKGIMFQDITTLLLDPKAFKDTIDLFVERYRDMNISVVAGIEAR 69
Query: 97 GFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYVLEYGTDCLQMHVGAIEPGERVLIVD 156
GFIFG IALAIGAKF+PLRKPKKLPG++I E Y LEYG+D L+MHV A++ G+R L+VD
Sbjct: 70 GFIFGSPIALAIGAKFVPLRKPKKLPGQIIFEEYELEYGSDRLEMHVEAVDSGDRALVVD 129
Query: 157 DLVATGGTLCAAIRLLERAGADVVECACLIGLPKFKDFYKLNGKPVYVLVESR 209
DL+ATGGTLCAA+ LL+R GA+V+ECAC+I LP+ K +L GKP+YVLVE R
Sbjct: 130 DLIATGGTLCAAMNLLKRVGAEVIECACVIELPELKGRERLEGKPLYVLVEYR 182
>AT4G22570.1 | chr4:11882310-11885250 REVERSE LENGTH=184
Length = 183
Score = 243 bits (621), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/173 (68%), Positives = 139/173 (80%)
Query: 37 RLQGISDAIRVVPHFPKQGIMFNDITPLLLRPGVFKDAVDIFVERYRGMAIAAVAGIEAR 96
R+ GI IRVVP FPK+GIMF DIT +LL P FKD +D+FVERYR I+ VAGIEAR
Sbjct: 11 RIHGIKTKIRVVPDFPKKGIMFQDITTVLLDPKAFKDTIDLFVERYRDKNISVVAGIEAR 70
Query: 97 GFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYVLEYGTDCLQMHVGAIEPGERVLIVD 156
GF+FGP IALAIGAKF+PLRKPKKLPGE I E Y LEYG D L+MH+GA+E G+R L+VD
Sbjct: 71 GFLFGPPIALAIGAKFVPLRKPKKLPGETIFEEYELEYGNDRLEMHIGAVEAGDRALVVD 130
Query: 157 DLVATGGTLCAAIRLLERAGADVVECACLIGLPKFKDFYKLNGKPVYVLVESR 209
DL+ATGGTLCAAI LLER GA+VVECAC+I LP+ K +L GKP+ +LVE R
Sbjct: 131 DLIATGGTLCAAINLLERVGAEVVECACVIELPELKGRQRLKGKPLCMLVEYR 183
>AT1G27450.3 | chr1:9532042-9533807 FORWARD LENGTH=285
Length = 284
Score = 219 bits (558), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 112/197 (56%), Positives = 137/197 (69%), Gaps = 25/197 (12%)
Query: 37 RLQGISDAIRVVPHFPKQGIMFNDITPLLLRPGVFKDAVDIFVERYRGMAIAAVAGIEAR 96
R+ I+ +IRV+P FPK GIMF DIT LLL FKD + +FV+RY+ I+ VAG+EAR
Sbjct: 86 RIAKIASSIRVIPDFPKPGIMFQDITTLLLDTEAFKDTIALFVDRYKDKGISVVAGVEAR 145
Query: 97 GFIFGPAIALAIGAKFIPLRKPKKLPG-------------------------EVISETYV 131
GFIFGP IALAIGAKF+P+RKPKKLPG +VISE Y
Sbjct: 146 GFIFGPPIALAIGAKFVPMRKPKKLPGTFLFLPLVACDFDIKLHERSQLGSWKVISEEYS 205
Query: 132 LEYGTDCLQMHVGAIEPGERVLIVDDLVATGGTLCAAIRLLERAGADVVECACLIGLPKF 191
LEYGTD ++MHVGA+EPGER +I+DDL+ATGGTL AAIRLLER G +VECAC+I LP+
Sbjct: 206 LEYGTDTIEMHVGAVEPGERAIIIDDLIATGGTLAAAIRLLERVGVKIVECACVIELPEL 265
Query: 192 KDFYKLNGKPVYVLVES 208
K KL ++VLV+S
Sbjct: 266 KGKEKLGETSLFVLVKS 282
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.146 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,742,448
Number of extensions: 147908
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 5
Length of query: 213
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 119
Effective length of database: 8,529,465
Effective search space: 1015006335
Effective search space used: 1015006335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)