Os12g0589100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenine phosphoribosyltransferase.
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Os12g0589100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenine phosphoribosyltransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.15 | 0.339 | 12.9 | -1.83 | 0.807 | 0.667 | -0.63 | -1.53 | -0.225 | 21.9 | 19.6 | 1630 | -- | -- |
| 56.04 | 0.349 | 12.9 | -1.67 | 0.735 | 0.906 | -0.592 | -- | -0.2 | 21.8 | 19.5 | 2058 | -- | -- |
| 52.82 | 0.339 | 12.9 | -1.84 | 0.77 | 0.594 | -- | -1.54 | -0.228 | 21.9 | 19.33 | 2092 | -- | -- |
| 56.21 | 0.349 | 12.8 | -1.7 | 0.756 | 1 | -- | -- | -0.172 | 21.8 | 18.4 | 2255 | -- | -- |
| 83.19 | 0.425 | 12.9 | -1.81 | -- | 0.856 | -- | -1.21 | -0.228 | -- | 19.47 | 835 | -- | -- |
| 70.23 | 0.393 | 12.8 | -1.25 | 0.797 | -- | -0.52 | -- | -0.00836 | 21.9 | -- | -- | -- | -- |
| 71.28 | 0.395 | 12.8 | -1.23 | 0.799 | -- | -- | -- | -0.00735 | 21.9 | -- | -- | -- | -- |
| 85.17 | 0.43 | 12.8 | -1.62 | -- | 1.08 | -- | -- | -0.193 | -- | 19.4 | 855 | -- | -- |
| 100.24 | 0.466 | 12.8 | -- | 0.84 | -0.533 | -- | -- | 0.249 | 21.6 | 21 | 17518 | -- | -- |
| 109.61 | 0.489 | 12.8 | -1.22 | -- | -- | -- | -- | -0.00711 | -- | -- | -- | -- | -- |
| 110.84 | 0.492 | 12.8 | -- | 0.795 | -- | -- | -- | 0.129 | 21.8 | -- | -- | -- | -- |
| 127.37 | 0.526 | 12.7 | -- | -- | -0.675 | -- | -- | 0.363 | -- | 22.1 | 47520 | -- | -- |
| 148.61 | 0.569 | 12.8 | -- | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 48.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 5 | 48.71 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 8 | 48.75 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 11 |
| 36 | 49.21 | humidity | 80 | 14400 | > th | dose dependent | sin | 11 | NA |
| 62 | 49.60 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 71 | 49.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 74 | 49.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 79 | 49.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 82 | 49.78 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 85 | 49.80 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 90 | 49.82 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 92 | 49.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 97 | 49.85 | humidity | 90 | 14400 | < th | dose independent | sin | 11 | NA |
| 100 | 49.86 | humidity | 90 | 14400 | > th | dose independent | sin | 13 | NA |
| 105 | 49.88 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 107 | 49.89 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 110 | 49.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 116 | 49.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 121 | 49.93 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 130 | 49.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 150 | 50.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 197 | 50.07 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 206 | 50.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 13 |
| 255 | 50.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 21 |
| 261 | 50.18 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 298 | 50.25 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 317 | 50.27 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 381 | 50.34 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 433 | 50.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 457 | 50.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 466 | 50.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 505 | 50.48 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 541 | 50.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 552 | 50.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 786 | 50.82 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 907 | 50.98 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |