BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0589100 Os12g0589100|AK073627
(240 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27450.3 | chr1:9532042-9533807 FORWARD LENGTH=285 271 3e-73
AT4G22570.1 | chr4:11882310-11885250 REVERSE LENGTH=184 263 9e-71
AT4G12440.2 | chr4:7376268-7380120 FORWARD LENGTH=183 257 3e-69
AT5G11160.1 | chr5:3550774-3551986 FORWARD LENGTH=192 246 7e-66
AT1G80050.1 | chr1:30111708-30113261 REVERSE LENGTH=193 236 7e-63
>AT1G27450.3 | chr1:9532042-9533807 FORWARD LENGTH=285
Length = 284
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/193 (69%), Positives = 157/193 (81%), Gaps = 25/193 (12%)
Query: 72 IASTIRVIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIF 131
IAS+IRVIPDFPKPGIMFQDITT+LL +AF+DTI LFV+RYKDKGI+V+AGVEARGFIF
Sbjct: 90 IASSIRVIPDFPKPGIMFQDITTLLLDTEAFKDTIALFVDRYKDKGISVVAGVEARGFIF 149
Query: 132 GPPIALALGAKFVPLRKPKKLPG-------------------------EVISEEYSLEYG 166
GPPIALA+GAKFVP+RKPKKLPG +VISEEYSLEYG
Sbjct: 150 GPPIALAIGAKFVPMRKPKKLPGTFLFLPLVACDFDIKLHERSQLGSWKVISEEYSLEYG 209
Query: 167 TDKIEMHVGAVEPNGRAVVVDDLIATGGTLSAAVKLIERAGAEVVECACVIELPELKGRD 226
TD IEMHVGAVEP RA+++DDLIATGGTL+AA++L+ER G ++VECACVIELPELKG++
Sbjct: 210 TDTIEMHVGAVEPGERAIIIDDLIATGGTLAAAIRLLERVGVKIVECACVIELPELKGKE 269
Query: 227 KLGNKPVFVLVKA 239
KLG +FVLVK+
Sbjct: 270 KLGETSLFVLVKS 282
>AT4G22570.1 | chr4:11882310-11885250 REVERSE LENGTH=184
Length = 183
Score = 263 bits (671), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 126/167 (75%), Positives = 147/167 (88%)
Query: 72 IASTIRVIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIF 131
I + IRV+PDFPK GIMFQDITT+LL P AF+DTI+LFVERY+DK I+V+AG+EARGF+F
Sbjct: 15 IKTKIRVVPDFPKKGIMFQDITTVLLDPKAFKDTIDLFVERYRDKNISVVAGIEARGFLF 74
Query: 132 GPPIALALGAKFVPLRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIA 191
GPPIALA+GAKFVPLRKPKKLPGE I EEY LEYG D++EMH+GAVE RA+VVDDLIA
Sbjct: 75 GPPIALAIGAKFVPLRKPKKLPGETIFEEYELEYGNDRLEMHIGAVEAGDRALVVDDLIA 134
Query: 192 TGGTLSAAVKLIERAGAEVVECACVIELPELKGRDKLGNKPVFVLVK 238
TGGTL AA+ L+ER GAEVVECACVIELPELKGR +L KP+ +LV+
Sbjct: 135 TGGTLCAAINLLERVGAEVVECACVIELPELKGRQRLKGKPLCMLVE 181
>AT4G12440.2 | chr4:7376268-7380120 FORWARD LENGTH=183
Length = 182
Score = 257 bits (657), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 122/167 (73%), Positives = 148/167 (88%)
Query: 72 IASTIRVIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIF 131
I + IRV+PDFPK GIMFQDITT+LL P AF+DTI+LFVERY+D I+V+AG+EARGFIF
Sbjct: 14 IKTKIRVVPDFPKKGIMFQDITTLLLDPKAFKDTIDLFVERYRDMNISVVAGIEARGFIF 73
Query: 132 GPPIALALGAKFVPLRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIA 191
G PIALA+GAKFVPLRKPKKLPG++I EEY LEYG+D++EMHV AV+ RA+VVDDLIA
Sbjct: 74 GSPIALAIGAKFVPLRKPKKLPGQIIFEEYELEYGSDRLEMHVEAVDSGDRALVVDDLIA 133
Query: 192 TGGTLSAAVKLIERAGAEVVECACVIELPELKGRDKLGNKPVFVLVK 238
TGGTL AA+ L++R GAEV+ECACVIELPELKGR++L KP++VLV+
Sbjct: 134 TGGTLCAAMNLLKRVGAEVIECACVIELPELKGRERLEGKPLYVLVE 180
>AT5G11160.1 | chr5:3550774-3551986 FORWARD LENGTH=192
Length = 191
Score = 246 bits (628), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 116/167 (69%), Positives = 144/167 (86%)
Query: 72 IASTIRVIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIF 131
I++ IRV+P+FPK GIMFQDITT+LL AF+ TI++FV+RYKD I+V+AGVEARGF+F
Sbjct: 17 ISAAIRVVPNFPKKGIMFQDITTLLLDHKAFKHTIDIFVDRYKDMQISVVAGVEARGFLF 76
Query: 132 GPPIALALGAKFVPLRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIA 191
GP IALA+GAKF+PLRKP KLPG+VISE Y LEYG D++EMHVGAVEP R +++DDL+A
Sbjct: 77 GPSIALAIGAKFIPLRKPGKLPGKVISESYELEYGHDRLEMHVGAVEPRERVIIIDDLVA 136
Query: 192 TGGTLSAAVKLIERAGAEVVECACVIELPELKGRDKLGNKPVFVLVK 238
TGGTLSAA+ L+E GAEVVECACVI LPE+KG+ KL KP++VLV+
Sbjct: 137 TGGTLSAAMSLLESQGAEVVECACVIGLPEVKGQHKLKGKPLYVLVE 183
>AT1G80050.1 | chr1:30111708-30113261 REVERSE LENGTH=193
Length = 192
Score = 236 bits (603), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 114/169 (67%), Positives = 141/169 (83%)
Query: 72 IASTIRVIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVEARGFIF 131
I+ IRVIP FPK GIMFQDITT+LL P AF+ +++FV+RYK I+++AGVEARGFIF
Sbjct: 17 ISDAIRVIPHFPKTGIMFQDITTLLLDPVAFKHVVDIFVDRYKHMNISLVAGVEARGFIF 76
Query: 132 GPPIALALGAKFVPLRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEPNGRAVVVDDLIA 191
GPPIALA+GAKFVPLRKP KLPG VISEEY LEYG D +EM V AV+ RA+++DDL+A
Sbjct: 77 GPPIALAIGAKFVPLRKPGKLPGRVISEEYELEYGRDCLEMSVEAVKSEERALIIDDLVA 136
Query: 192 TGGTLSAAVKLIERAGAEVVECACVIELPELKGRDKLGNKPVFVLVKAD 240
TGGTLSA++ L+ERAGAEVVECACV+ LP+ KG+ KL KP++VLV+ +
Sbjct: 137 TGGTLSASINLLERAGAEVVECACVVGLPKFKGQCKLKGKPLYVLVEPN 185
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.142 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,817,846
Number of extensions: 145514
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 5
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)