Os04g0504000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT).
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Os04g0504000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.1 | 0.544 | 10.9 | 1.06 | 3.19 | -3.57 | -0.127 | 2.94 | 0.0762 | 20 | 0.5206 | 745 | -- | -- |
| 139.68 | 0.55 | 10.9 | 1.05 | 3.36 | -3.81 | 1.65 | -- | 0.0845 | 19.8 | 0.52 | 753 | -- | -- |
| 133.99 | 0.539 | 10.9 | 1.06 | 3.22 | -3.62 | -- | 2.81 | 0.074 | 20 | 0.51 | 748 | -- | -- |
| 143.45 | 0.558 | 10.9 | 1 | 3.69 | -4.32 | -- | -- | 0.0651 | 20 | 0.46 | 790 | -- | -- |
| 196.39 | 0.656 | 10.8 | 0.711 | -- | -1.15 | -- | 0.531 | -0.0329 | -- | 1.379 | 3177 | -- | -- |
| 172.01 | 0.615 | 10.9 | 0.631 | 1.65 | -- | -0.473 | -- | -0.0956 | 0.0348 | -- | -- | -- | -- |
| 172.94 | 0.616 | 10.9 | 0.651 | 1.65 | -- | -- | -- | -0.0928 | 24 | -- | -- | -- | -- |
| 194.9 | 0.65 | 11 | 0.499 | -- | -2.84 | -- | -- | -0.207 | -- | 1.118 | 1684 | -- | -- |
| 170.07 | 0.607 | 10.9 | -- | 3.48 | -3.92 | -- | -- | -0.0575 | 20 | 0.5151 | 781 | -- | -- |
| 345.33 | 0.868 | 10.9 | 0.702 | -- | -- | -- | -- | -0.0701 | -- | -- | -- | -- | -- |
| 184.1 | 0.635 | 10.9 | -- | 1.66 | -- | -- | -- | -0.165 | 24 | -- | -- | -- | -- |
| 209.5 | 0.676 | 10.9 | -- | -- | -1.15 | -- | -- | -0.123 | -- | 1.118 | 1684 | -- | -- |
| 358.32 | 0.884 | 10.9 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 3 | 133.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 6 | 134.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 13 | 134.88 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 8 |
| 16 | 135.05 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 15 |
| 19 | 135.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 27 | 135.59 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 31 | 135.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 40 | 135.92 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 43 | 135.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 51 | 136.11 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 56 | 136.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 61 | 136.23 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 22 |
| 77 | 136.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 91 | 136.56 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 99 | 136.64 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 105 | 136.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 124 | 136.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 128 | 136.95 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 138 | 137.01 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 170 | 137.15 | radiation | 1 | 720 | < th | dose dependent | sin | 12 | NA |
| 173 | 137.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 202 | 137.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 240 | 137.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 251 | 137.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 252 | 137.47 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 23 |
| 255 | 137.51 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 23 |
| 261 | 137.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 286 | 137.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 295 | 137.74 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 316 | 137.87 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 342 | 138.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 354 | 138.11 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 23 |
| 360 | 138.16 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 422 | 138.20 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 23 |
| 423 | 138.20 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 428 | 138.26 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 18 |
| 435 | 138.30 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 463 | 138.45 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 476 | 138.48 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 23 |
| 487 | 138.54 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 23 |
| 509 | 138.66 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 515 | 138.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 569 | 139.14 | radiation | 1 | 720 | > th | dose independent | sin | 1 | NA |
| 596 | 139.34 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 714 | 140.14 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 19 |
| 745 | 140.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 793 | 140.36 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 804 | 140.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 851 | 140.59 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 895 | 140.73 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 896 | 140.73 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 920 | 140.84 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 924 | 140.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 947 | 140.94 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 951 | 140.95 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 962 | 140.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 975 | 140.99 | humidity | 60 | 1440 | > th | dose dependent | rect. | 8 | 6 |