BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0504000 Os04g0504000|AY238894
(212 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80050.1 | chr1:30111708-30113261 REVERSE LENGTH=193 265 1e-71
AT5G11160.1 | chr5:3550774-3551986 FORWARD LENGTH=192 263 3e-71
AT4G22570.1 | chr4:11882310-11885250 REVERSE LENGTH=184 250 4e-67
AT4G12440.2 | chr4:7376268-7380120 FORWARD LENGTH=183 248 1e-66
AT1G27450.3 | chr1:9532042-9533807 FORWARD LENGTH=285 231 2e-61
>AT1G80050.1 | chr1:30111708-30113261 REVERSE LENGTH=193
Length = 192
Score = 265 bits (677), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/182 (70%), Positives = 149/182 (81%)
Query: 31 ENGRAADPRLQAISDAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIA 90
ENG DPRL+AISDAIRV+PHFPK GIMF DIT LLL P AFK VD+FV+RY+ M I+
Sbjct: 5 ENGLQGDPRLKAISDAIRVIPHFPKTGIMFQDITTLLLDPVAFKHVVDIFVDRYKHMNIS 64
Query: 91 AVAGIEARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEP 150
VAG+EARGFIFGP IALAIGAKF+PLRKP KLPG VISE Y LEYG DCLEM V A +
Sbjct: 65 LVAGVEARGFIFGPPIALAIGAKFVPLRKPGKLPGRVISEEYELEYGRDCLEMSVEAVKS 124
Query: 151 GERVVVVDDLVATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVES 210
ER +++DDLVATGGTL A+I LLERAGA+VVECAC++GLPK+K KL GKP+Y+LVE
Sbjct: 125 EERALIIDDLVATGGTLSASINLLERAGAEVVECACVVGLPKFKGQCKLKGKPLYVLVEP 184
Query: 211 RK 212
+
Sbjct: 185 NQ 186
>AT5G11160.1 | chr5:3550774-3551986 FORWARD LENGTH=192
Length = 191
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 128/179 (71%), Positives = 151/179 (84%)
Query: 31 ENGRAADPRLQAISDAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIA 90
ENG DPRL+AIS AIRVVP+FPK GIMF DIT LLL AFK +D+FV+RY+ M+I+
Sbjct: 5 ENGLKGDPRLEAISAAIRVVPNFPKKGIMFQDITTLLLDHKAFKHTIDIFVDRYKDMQIS 64
Query: 91 AVAGIEARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEP 150
VAG+EARGF+FGP+IALAIGAKFIPLRKP KLPG+VISE+Y LEYG D LEMHVGA EP
Sbjct: 65 VVAGVEARGFLFGPSIALAIGAKFIPLRKPGKLPGKVISESYELEYGHDRLEMHVGAVEP 124
Query: 151 GERVVVVDDLVATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVE 209
ERV+++DDLVATGGTL AA+ LLE GA+VVECAC+IGLP+ K +KL GKP+Y+LVE
Sbjct: 125 RERVIIIDDLVATGGTLSAAMSLLESQGAEVVECACVIGLPEVKGQHKLKGKPLYVLVE 183
>AT4G22570.1 | chr4:11882310-11885250 REVERSE LENGTH=184
Length = 183
Score = 250 bits (638), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/180 (68%), Positives = 140/180 (77%)
Query: 32 NGRAADPRLQAISDAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIAA 91
N DPR+ I IRVVP FPK GIMF DIT +LL P AFKD +D+FVERYR I+
Sbjct: 4 NKEEEDPRIHGIKTKIRVVPDFPKKGIMFQDITTVLLDPKAFKDTIDLFVERYRDKNISV 63
Query: 92 VAGIEARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEPG 151
VAGIEARGF+FGP IALAIGAKF+PLRKPKKLPGE I E Y LEYG D LEMH+GA E G
Sbjct: 64 VAGIEARGFLFGPPIALAIGAKFVPLRKPKKLPGETIFEEYELEYGNDRLEMHIGAVEAG 123
Query: 152 ERVVVVDDLVATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVESR 211
+R +VVDDL+ATGGTLCAAI LLER GA+VVECAC+I LP+ K +L GKP+ +LVE R
Sbjct: 124 DRALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPELKGRQRLKGKPLCMLVEYR 183
>AT4G12440.2 | chr4:7376268-7380120 FORWARD LENGTH=183
Length = 182
Score = 248 bits (634), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/175 (68%), Positives = 141/175 (80%)
Query: 37 DPRLQAISDAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIE 96
DPR+ I IRVVP FPK GIMF DIT LLL P AFKD +D+FVERYR M I+ VAGIE
Sbjct: 8 DPRIDGIKTKIRVVPDFPKKGIMFQDITTLLLDPKAFKDTIDLFVERYRDMNISVVAGIE 67
Query: 97 ARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEPGERVVV 156
ARGFIFG IALAIGAKF+PLRKPKKLPG++I E Y LEYG+D LEMHV A + G+R +V
Sbjct: 68 ARGFIFGSPIALAIGAKFVPLRKPKKLPGQIIFEEYELEYGSDRLEMHVEAVDSGDRALV 127
Query: 157 VDDLVATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVESR 211
VDDL+ATGGTLCAA+ LL+R GA+V+ECAC+I LP+ K +L GKP+Y+LVE R
Sbjct: 128 VDDLIATGGTLCAAMNLLKRVGAEVIECACVIELPELKGRERLEGKPLYVLVEYR 182
>AT1G27450.3 | chr1:9532042-9533807 FORWARD LENGTH=285
Length = 284
Score = 231 bits (589), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 151/228 (66%), Gaps = 29/228 (12%)
Query: 12 SSCGCEDGTVEAPAAAAPKENGRAA----DPRLQAISDAIRVVPHFPKPGIMFNDITALL 67
S C C+ AAA +++ A DPR+ I+ +IRV+P FPKPGIMF DIT LL
Sbjct: 55 SLCVCKSDAEYFAKAAASRDSEMATEDVQDPRIAKIASSIRVIPDFPKPGIMFQDITTLL 114
Query: 68 LRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIFGPAIALAIGAKFIPLRKPKKLPG-- 125
L AFKD + +FV+RY+ I+ VAG+EARGFIFGP IALAIGAKF+P+RKPKKLPG
Sbjct: 115 LDTEAFKDTIALFVDRYKDKGISVVAGVEARGFIFGPPIALAIGAKFVPMRKPKKLPGTF 174
Query: 126 -----------------------EVISETYILEYGTDCLEMHVGATEPGERVVVVDDLVA 162
+VISE Y LEYGTD +EMHVGA EPGER +++DDL+A
Sbjct: 175 LFLPLVACDFDIKLHERSQLGSWKVISEEYSLEYGTDTIEMHVGAVEPGERAIIIDDLIA 234
Query: 163 TGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVES 210
TGGTL AAI+LLER G +VECAC+I LP+ K KL +++LV+S
Sbjct: 235 TGGTLAAAIRLLERVGVKIVECACVIELPELKGKEKLGETSLFVLVKS 282
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,629,333
Number of extensions: 184548
Number of successful extensions: 360
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 5
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)