BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0504000 Os04g0504000|AY238894
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0504000 Similar to Adenine phosphoribosyltransferase 2... 426 e-120
Os02g0613900 Similar to Adenine phosphoribosyltransferase 2... 330 4e-91
Os07g0484800 Similar to Adenine phosphoribosyltransferase (... 275 2e-74
Os12g0589100 Similar to Adenine phosphoribosyltransferase 244 5e-65
Os12g0592400 221 3e-58
>Os04g0504000 Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT)
Length = 212
Score = 426 bits (1096), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MGEEDISNDSKSSCGCEDGTVEAPAAAAPKENGRAADPRLQAISDAIRVVPHFPKPGIMF 60
MGEEDISNDSKSSCGCEDGTVEAPAAAAPKENGRAADPRLQAISDAIRVVPHFPKPGIMF
Sbjct: 1 MGEEDISNDSKSSCGCEDGTVEAPAAAAPKENGRAADPRLQAISDAIRVVPHFPKPGIMF 60
Query: 61 NDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIFGPAIALAIGAKFIPLRKP 120
NDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIFGPAIALAIGAKFIPLRKP
Sbjct: 61 NDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIFGPAIALAIGAKFIPLRKP 120
Query: 121 KKLPGEVISETYILEYGTDCLEMHVGATEPGERVVVVDDLVATGGTLCAAIKLLERAGAD 180
KKLPGEVISETYILEYGTDCLEMHVGATEPGERVVVVDDLVATGGTLCAAIKLLERAGAD
Sbjct: 121 KKLPGEVISETYILEYGTDCLEMHVGATEPGERVVVVDDLVATGGTLCAAIKLLERAGAD 180
Query: 181 VVECACLIGLPKYKNFYKLNGKPVYILVESRK 212
VVECACLIGLPKYKNFYKLNGKPVYILVESRK
Sbjct: 181 VVECACLIGLPKYKNFYKLNGKPVYILVESRK 212
>Os02g0613900 Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT)
Length = 213
Score = 330 bits (846), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 165/192 (85%), Positives = 175/192 (91%), Gaps = 4/192 (2%)
Query: 25 AAAAPKEN----GRAADPRLQAISDAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMF 80
AAA PK A DPRLQ ISDAIRVVPHFPK GIMFNDIT LLLRP FKDAVD+F
Sbjct: 19 AAAVPKPTPPPAAVAVDPRLQGISDAIRVVPHFPKQGIMFNDITPLLLRPGVFKDAVDIF 78
Query: 81 VERYRGMRIAAVAGIEARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDC 140
VERYRGM IAAVAGIEARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETY+LEYGTDC
Sbjct: 79 VERYRGMAIAAVAGIEARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYVLEYGTDC 138
Query: 141 LEMHVGATEPGERVVVVDDLVATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLN 200
L+MHVGA EPGERV++VDDLVATGGTLCAAI+LLERAGADVVECACLIGLPK+K+FYKLN
Sbjct: 139 LQMHVGAIEPGERVLIVDDLVATGGTLCAAIRLLERAGADVVECACLIGLPKFKDFYKLN 198
Query: 201 GKPVYILVESRK 212
GKPVY+LVESR+
Sbjct: 199 GKPVYVLVESRE 210
>Os07g0484800 Similar to Adenine phosphoribosyltransferase (EC 2.4.2.7)-like
protein
Length = 187
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 134/185 (72%), Positives = 151/185 (81%)
Query: 27 AAPKENGRAADPRLQAISDAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRG 86
A +E DPR QAI+ IRVVP+FPKPGIMF DIT LLL P FKD +D+FVERY G
Sbjct: 2 AGSEEKKEMQDPRTQAIASTIRVVPNFPKPGIMFQDITTLLLNPPVFKDTIDLFVERYTG 61
Query: 87 MRIAAVAGIEARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVG 146
I+ VAG+EARGFIFGP IALAIGAKFIPLRKP KLPGEV+S+ Y LEYG DCLEMHVG
Sbjct: 62 KGISVVAGVEARGFIFGPPIALAIGAKFIPLRKPNKLPGEVMSKEYELEYGADCLEMHVG 121
Query: 147 ATEPGERVVVVDDLVATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYI 206
A +PGER +VVDDLVATGGTLCAAI LLERAGA+VVECAC+I LP+ K +LNGKP+Y+
Sbjct: 122 AVQPGERALVVDDLVATGGTLCAAIVLLERAGAEVVECACVIELPELKGRERLNGKPLYV 181
Query: 207 LVESR 211
LVES
Sbjct: 182 LVESH 186
>Os12g0589100 Similar to Adenine phosphoribosyltransferase
Length = 240
Score = 244 bits (622), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 117/174 (67%), Positives = 143/174 (82%)
Query: 37 DPRLQAISDAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIE 96
+ R+ I+ IRV+P FPKPGIMF DIT +LL+P AF+D +++FVERY+ I +AG+E
Sbjct: 66 EARVARIASTIRVIPDFPKPGIMFQDITTMLLKPDAFRDTIELFVERYKDKGITVIAGVE 125
Query: 97 ARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEPGERVVV 156
ARGFIFGP IALA+GAKF+PLRKPKKLPGEVISE Y LEYGTD +EMHVGA EP R VV
Sbjct: 126 ARGFIFGPPIALALGAKFVPLRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEPNGRAVV 185
Query: 157 VDDLVATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVES 210
VDDL+ATGGTL AA+KL+ERAGA+VVECAC+I LP+ K KL KPV++LV++
Sbjct: 186 VDDLIATGGTLSAAVKLIERAGAEVVECACVIELPELKGRDKLGNKPVFVLVKA 239
>Os12g0592400
Length = 188
Score = 221 bits (563), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/187 (59%), Positives = 138/187 (73%)
Query: 25 AAAAPKENGRAADPRLQAISDAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERY 84
A A N D R+ I+ AI V P FPKPGI F D+T + +P F+DA+ +FVERY
Sbjct: 2 AIAGDDSNHGVDDARIARIAAAITVFPGFPKPGISFQDVTGIFHKPEVFRDAIGLFVERY 61
Query: 85 RGMRIAAVAGIEARGFIFGPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMH 144
+G + VAGIEARGF F P IAL +GAKF+PLRKP+KLPGEVISE Y LEYGTD +EM
Sbjct: 62 KGKGVTLVAGIEARGFFFAPTIALEVGAKFVPLRKPRKLPGEVISEEYSLEYGTDKIEMQ 121
Query: 145 VGATEPGERVVVVDDLVATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPV 204
+GA EP +R ++VDDL+ATGGTLCAA+KLLERAGA+VVECAC++ L + K KL PV
Sbjct: 122 IGAVEPNDRAIIVDDLIATGGTLCAAVKLLERAGAEVVECACVVELQELKGREKLGKIPV 181
Query: 205 YILVESR 211
++LVE+
Sbjct: 182 FVLVETN 188
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.139 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,683,354
Number of extensions: 333210
Number of successful extensions: 968
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 5
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)