BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0578200 Os12g0578200|AK105512
(332 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0578200 Similar to Chorismate mutase, chloroplast prec... 566 e-162
Os01g0764400 Similar to Chorismate mutase, chloroplast prec... 304 5e-83
Os08g0441600 Similar to Chorismate mutase CM2 (EC 5.4.99.5)... 216 1e-56
Os02g0180500 Similar to Chorismate mutase CM2 (EC 5.4.99.5)... 210 1e-54
>Os12g0578200 Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5)
(CM-1)
Length = 332
Score = 566 bits (1459), Expect = e-162, Method: Compositional matrix adjust.
Identities = 280/332 (84%), Positives = 280/332 (84%)
Query: 1 MELPLDKAAARSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MELPLDKAAARST
Sbjct: 1 MELPLDKAAARSTPLALPAAGAAAAANQSPASLPLGPPAAASAKPLVAAANPPLLPVVAP 60
Query: 61 XXXXXKSSSGAVEESKEGVEESNKSNVLTIGSIRSTLMKHEDTIIFGLLERSQFCYNPDT 120
KSSSGAVEESKEGVEESNKSNVLTIGSIRSTLMKHEDTIIFGLLERSQFCYNPDT
Sbjct: 61 AAAAPKSSSGAVEESKEGVEESNKSNVLTIGSIRSTLMKHEDTIIFGLLERSQFCYNPDT 120
Query: 121 YDPNASRIVRFNGSLVEFMVKKTEKMHARMGRYKSPDEHPFFPENLLEVVEPSVEYENVL 180
YDPNASRIVRFNGSLVEFMVKKTEKMHARMGRYKSPDEHPFFPENLLEVVEPSVEYENVL
Sbjct: 121 YDPNASRIVRFNGSLVEFMVKKTEKMHARMGRYKSPDEHPFFPENLLEVVEPSVEYENVL 180
Query: 181 HPAAANININKRIWDVYFGDLLPRLVKEGSDGNCGSSACWDMLILQALSKRIHYGKYVAE 240
HPAAANININKRIWDVYFGDLLPRLVKEGSDGNCGSSACWDMLILQALSKRIHYGKYVAE
Sbjct: 181 HPAAANININKRIWDVYFGDLLPRLVKEGSDGNCGSSACWDMLILQALSKRIHYGKYVAE 240
Query: 241 AKFQGAPDTYTPAILNKDSDKLMELLTFAKVEDDVRARVMSKAMTFGQVVSEDLENEIKL 300
AKFQGAPDTYTPAILNKDSDKLMELLTFAKVEDDVRARVMSKAMTFGQVVSEDLENEIKL
Sbjct: 241 AKFQGAPDTYTPAILNKDSDKLMELLTFAKVEDDVRARVMSKAMTFGQVVSEDLENEIKL 300
Query: 301 KIEPELAVELYDKWIMPLTKEVQVQYLLKRLD 332
KIEPELAVELYDKWIMPLTKEVQVQYLLKRLD
Sbjct: 301 KIEPELAVELYDKWIMPLTKEVQVQYLLKRLD 332
>Os01g0764400 Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5)
(CM-1)
Length = 313
Score = 304 bits (779), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 195/261 (74%), Gaps = 3/261 (1%)
Query: 75 SKEGVEESNKSNVLTIGSIRSTLMKHEDTIIFGLLERSQFCYNPDTYDPNASRIVRFNGS 134
+KE + ++S +LT+ +IR++L++ ED+IIF LLER+QFCYN D YD NA + F+GS
Sbjct: 53 TKEEKQRIDQSEILTLDNIRTSLVRQEDSIIFSLLERAQFCYNADIYDKNAFHVDGFDGS 112
Query: 135 LVEFMVKKTEKMHARMGRYKSPDEHPFFPENLLEVVEPSVEYENVLHPAAANININKRIW 194
LVEFMV++TEK+H ++GRYKSPDEHPFFPE+L E + P ++Y VLHP A +ININK IW
Sbjct: 113 LVEFMVRETEKLHQQVGRYKSPDEHPFFPEDLPEPLLPPLQYPKVLHPIADSININKEIW 172
Query: 195 DVYFGDLLPRLVKEGSDGNCGSSACWDMLILQALSKRIHYGKYVAEAKFQGAPDTYTPAI 254
+YF +LLPRLVKEGSDGN GSSA D + LQALSKRIHYGK+VAEAKFQ +P+ Y PAI
Sbjct: 173 KMYFDELLPRLVKEGSDGNYGSSALCDTICLQALSKRIHYGKFVAEAKFQESPEAYMPAI 232
Query: 255 LNKDSDKLMELLTFAKVEDDVRARVMSKAMTFGQVV---SEDLENEIKLKIEPELAVELY 311
+ +D D+LM LLT+ VE + RV +KA FGQ V +ED KI P L ELY
Sbjct: 233 IAQDCDQLMHLLTYETVERAIEHRVEAKAKIFGQEVDLGAEDNGAPPMYKIRPSLVAELY 292
Query: 312 DKWIMPLTKEVQVQYLLKRLD 332
IMPLTKEVQV YLL+RLD
Sbjct: 293 SYRIMPLTKEVQVAYLLRRLD 313
>Os08g0441600 Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase)
Length = 284
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 155/251 (61%), Gaps = 10/251 (3%)
Query: 92 SIRSTLMKHEDTIIFGLLERSQFCYNPDTYDPN--ASRIVRFNGSLVEFMVKKTEKMHAR 149
++R L + EDT++FGL+ER++ N YDP A + S E V+++E + A+
Sbjct: 34 TVREFLTREEDTVVFGLIERAKHPRNTPAYDPGYLAGGGHGHDASFAEMFVRESEAVQAK 93
Query: 150 MGRYKSPDEHPFFPENLLEVVEPSVEYENVLHPAAANININKRIWDVYFGDLLPRLVKEG 209
GRY+S E PFFP + + P + L+ AAA +N+N IW +YF +LLP L K G
Sbjct: 94 AGRYQSLQEIPFFPFRVPFTLAPPYNFTTELYSAAALVNVNDAIWSMYFNELLPLLAKNG 153
Query: 210 SDGNCGSSACWDMLILQALSKRIHYGKYVAEAKFQGAPDTYTPAILNKDSDKLMELLTFA 269
DGN ++ D++ LQALS+RI+YG+YVAE KF G YT I NKD+D LM+LLT
Sbjct: 154 DDGNYAATVSSDLVCLQALSRRINYGRYVAEVKFIGDQQNYTTLIRNKDTDALMKLLTSE 213
Query: 270 KVEDDVRARVMSKAMTFGQVVSEDL--------ENEIKLKIEPELAVELYDKWIMPLTKE 321
ED V+ RV KAM FGQ V+ D ++ K++P L +LYDKW++PLTK+
Sbjct: 214 AQEDVVKRRVQKKAMVFGQNVTLDGPVETGNSNSSQTSFKVDPSLVYKLYDKWVIPLTKQ 273
Query: 322 VQVQYLLKRLD 332
V+V+YLL RLD
Sbjct: 274 VEVEYLLHRLD 284
>Os02g0180500 Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase)
Length = 255
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 158/253 (62%), Gaps = 11/253 (4%)
Query: 88 LTIGSIRSTLMKHEDTIIFGLLERSQFCYNPDTYDPNASRIVRFNGSLVEFMVKKTEKMH 147
L++ ++R L++ ED+I+F L+ER++ P A+ SL EF V++ E +H
Sbjct: 6 LSLAAVRDALVREEDSIVFALIERAR---RPRNAPAYAAAAAAGGRSLAEFFVREAEVLH 62
Query: 148 ARMGRYKSPDEHPFFPENLLEVVEPSVEYENVLHPAAANININKRIWDVYFGDLLPRLVK 207
A+ G+Y+ P++ PFFP++L + P+ +Y VLH A+++++N IW +YF +LLP
Sbjct: 63 AKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLFTV 122
Query: 208 EGSDGNCGSSACWDMLILQALSKRIHYGKYVAEAKFQGAPDTYTPAILNKDSDKLMELLT 267
+G DGN + D L+ALS+RIH GKYVAE KF+ A Y+P I KD+ LM LLT
Sbjct: 123 DGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNLLT 182
Query: 268 FAKVEDDVRARVMSKAMTFGQVVS--------EDLENEIKLKIEPELAVELYDKWIMPLT 319
F VE+ V+ RV KA FGQ V+ E + + K+ PE+ +LYD W+MPLT
Sbjct: 183 FKAVEEKVKRRVEKKARIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMPLT 242
Query: 320 KEVQVQYLLKRLD 332
K+V+V+YLL+RLD
Sbjct: 243 KDVEVEYLLRRLD 255
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,908,333
Number of extensions: 342904
Number of successful extensions: 925
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 231
Effective length of database: 11,762,187
Effective search space: 2717065197
Effective search space used: 2717065197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)