Os02g0180500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase).
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Os02g0180500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.76 | 0.273 | 7.65 | 0.55 | 0.603 | 0.367 | -0.0828 | -0.603 | 0.0356 | 4.87 | 25.03 | 267 | -- | -- |
| 34.13 | 0.272 | 7.62 | 0.722 | 0.642 | 0.355 | 0.164 | -- | 0.128 | 4.67 | 25.78 | 179 | -- | -- |
| 33.77 | 0.271 | 7.65 | 0.56 | 0.604 | 0.367 | -- | -0.568 | 0.0387 | 4.91 | 25.05 | 266 | -- | -- |
| 34.19 | 0.272 | 7.62 | 0.721 | 0.642 | 0.353 | -- | -- | 0.128 | 4.61 | 25.8 | 179 | -- | -- |
| 40.9 | 0.298 | 7.67 | 0.494 | -- | 0.408 | -- | -0.651 | 0.0391 | -- | 24.5 | 2732 | -- | -- |
| 39.97 | 0.296 | 7.6 | 0.826 | 0.358 | -- | 0.107 | -- | 0.258 | 4.97 | -- | -- | -- | -- |
| 39.98 | 0.296 | 7.6 | 0.825 | 0.358 | -- | -- | -- | 0.258 | 4.83 | -- | -- | -- | -- |
| 40.73 | 0.297 | 7.62 | 0.676 | -- | 0.388 | -- | -- | 0.11 | -- | 24.6 | 1263 | -- | -- |
| 47.43 | 0.321 | 7.63 | -- | 0.709 | 0.469 | -- | -- | 0.0891 | 4.43 | 26.8 | 192 | -- | -- |
| 46.77 | 0.32 | 7.6 | 0.838 | -- | -- | -- | -- | 0.267 | -- | -- | -- | -- | -- |
| 57.92 | 0.356 | 7.62 | -- | 0.373 | -- | -- | -- | 0.166 | 4.76 | -- | -- | -- | -- |
| 51.82 | 0.335 | 7.63 | -- | -- | 0.538 | -- | -- | 0.0541 | -- | 24.1 | 2808 | -- | -- |
| 65.31 | 0.377 | 7.62 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.26 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 10 |
| 9 | 30.41 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 13 |
| 13 | 30.48 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 40 | 31.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 41 | 31.33 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 20 |
| 42 | 31.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 61 | 31.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 17 |
| 74 | 31.67 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 89 | 31.78 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 91 | 31.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 106 | 31.86 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 116 | 31.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 125 | 31.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 134 | 31.97 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 16 |
| 143 | 32.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 193 | 32.20 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 21 |
| 195 | 32.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 234 | 32.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 246 | 32.35 | temperature | 25 | 720 | < th | dose independent | sin | 6 | NA |
| 280 | 32.42 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 11 |
| 324 | 32.51 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 16 |
| 358 | 32.57 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 466 | 32.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 515 | 32.89 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 518 | 32.89 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 22 |
| 546 | 32.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 680 | 33.16 | temperature | 25 | 720 | > th | dose independent | sin | 6 | NA |
| 730 | 33.22 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 751 | 33.25 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 866 | 33.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 19 |