BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0180500 Os02g0180500|AK101220
         (255 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10870.1  | chr5:3430691-3432272 REVERSE LENGTH=266            239   1e-63
AT1G69370.1  | chr1:26080098-26081559 FORWARD LENGTH=317          205   1e-53
AT3G29200.1  | chr3:11164582-11166258 REVERSE LENGTH=341          204   4e-53

>AT5G10870.1 | chr5:3430691-3432272 REVERSE LENGTH=266
          Length = 265

 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/253 (49%), Positives = 156/253 (61%), Gaps = 7/253 (2%)

Query: 6   LSLAAVRDALVREEDSIVFALIEXXX---XXXXXXXXXXXXXXXXXSLAEFFVREAEVLH 62
           LSL  +R++L+R+ED+IVF+LIE                       SL EFFVRE E++ 
Sbjct: 17  LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETEIIQ 76

Query: 63  AKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLFTV 122
           AK G+Y+ PE+ PFF +++P  +FPT  YP  LH  A SV++N  IW +YF ELLPLF  
Sbjct: 77  AKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPLFVK 136

Query: 123 DGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNLLT 182
            GDDGNY  T A D ACL+ALSRRIH GK+VAEVKF+DA QDY P IRA+D +ALM LLT
Sbjct: 137 PGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMKLLT 196

Query: 183 FXXXXXXXXXXXXXXXXIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMPLT 242
           F                 FGQ V          G+    + KV+P + S++Y  W++PLT
Sbjct: 197 FEKVEEMVKKRVQKKAETFGQEVKFNSGY----GDESKKKYKVDPLLASRIYGEWLIPLT 252

Query: 243 KDVEVEYLLRRLD 255
           K VEVEYLLRRLD
Sbjct: 253 KLVEVEYLLRRLD 265



>AT1G69370.1 | chr1:26080098-26081559 FORWARD LENGTH=317
          Length = 316

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/253 (41%), Positives = 141/253 (55%), Gaps = 8/253 (3%)

Query: 6   LSLAAVRDALVREEDSIVFALIEXXXXXXXXXXX---XXXXXXXXXSLAEFFVREAEVLH 62
           L L ++R +L+R+EDSI+F L+E                       SL EF VRE E LH
Sbjct: 69  LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEGFQGSLVEFMVRETEKLH 128

Query: 63  AKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLFTV 122
           AK  +Y+ P++ PFFPQ LP P+ P   YP+VLH  A S+++N  +W MYF  LLP    
Sbjct: 129 AKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWNMYFKHLLPRLVK 188

Query: 123 DGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNLLT 182
            GDDGN       D  CL+ LS+RIH GK+VAE KF++    Y   I+ +D   LM LLT
Sbjct: 189 PGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIKEQDRTQLMQLLT 248

Query: 183 FXXXXXXXXXXXXXXXXIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMPLT 242
           +                IFGQ++T+ D   +      D   K+ P +++KLY   +MPLT
Sbjct: 249 YETVEEVVKKRVEIKARIFGQDITINDPETE-----ADPSYKIQPSLVAKLYGERIMPLT 303

Query: 243 KDVEVEYLLRRLD 255
           K+V++EYLLRRLD
Sbjct: 304 KEVQIEYLLRRLD 316



>AT3G29200.1 | chr3:11164582-11166258 REVERSE LENGTH=341
          Length = 340

 Score =  204 bits (519), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 105/255 (41%), Positives = 149/255 (58%), Gaps = 5/255 (1%)

Query: 6   LSLAAVRDALVREEDSIVFALIEXXXXXXXXXX---XXXXXXXXXXSLAEFFVREAEVLH 62
           L+L  +R++L+R+EDSI+F L+E                       SL E+ V+  E LH
Sbjct: 86  LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLH 145

Query: 63  AKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLFTV 122
           AK G+++ P++ PFFP DLP P+ P   YPKVLH  A S+++N  IW MYF +L+P    
Sbjct: 146 AKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVK 205

Query: 123 DGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNLLT 182
            GDDGNY  T   D  CL+ LS+RIH GK+VAE KF+ + + Y   I+A+D  ALM++LT
Sbjct: 206 KGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLT 265

Query: 183 FXXXXXXXXXXXXXXXXIFGQ--NVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMP 240
           F                 +GQ   V +E+  +++E        K++P ++  LY  W+MP
Sbjct: 266 FPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMP 325

Query: 241 LTKDVEVEYLLRRLD 255
           LTK+V+VEYLLRRLD
Sbjct: 326 LTKEVQVEYLLRRLD 340



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,736,370
Number of extensions: 175144
Number of successful extensions: 422
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 3
Length of query: 255
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 159
Effective length of database: 8,474,633
Effective search space: 1347466647
Effective search space used: 1347466647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)