BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0180500 Os02g0180500|AK101220
(255 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0180500 Similar to Chorismate mutase CM2 (EC 5.4.99.5)... 436 e-123
Os08g0441600 Similar to Chorismate mutase CM2 (EC 5.4.99.5)... 233 9e-62
Os01g0764400 Similar to Chorismate mutase, chloroplast prec... 196 1e-50
Os12g0578200 Similar to Chorismate mutase, chloroplast prec... 186 1e-47
>Os02g0180500 Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase)
Length = 255
Score = 436 bits (1121), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/255 (85%), Positives = 219/255 (85%)
Query: 1 MGEAELSLAAVRDALVREEDSIVFALIEXXXXXXXXXXXXXXXXXXXXSLAEFFVREAEV 60
MGEAELSLAAVRDALVREEDSIVFALIE SLAEFFVREAEV
Sbjct: 1 MGEAELSLAAVRDALVREEDSIVFALIERARRPRNAPAYAAAAAAGGRSLAEFFVREAEV 60
Query: 61 LHAKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLF 120
LHAKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLF
Sbjct: 61 LHAKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLF 120
Query: 121 TVDGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNL 180
TVDGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNL
Sbjct: 121 TVDGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNL 180
Query: 181 LTFXXXXXXXXXXXXXXXXIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMP 240
LTF IFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMP
Sbjct: 181 LTFKAVEEKVKRRVEKKARIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMP 240
Query: 241 LTKDVEVEYLLRRLD 255
LTKDVEVEYLLRRLD
Sbjct: 241 LTKDVEVEYLLRRLD 255
>Os08g0441600 Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase)
Length = 284
Score = 233 bits (595), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 123/251 (49%), Positives = 154/251 (61%), Gaps = 5/251 (1%)
Query: 10 AVRDALVREEDSIVFALIEXXXXXXXX-----XXXXXXXXXXXXSLAEFFVREAEVLHAK 64
VR+ L REED++VF LIE S AE FVRE+E + AK
Sbjct: 34 TVREFLTREEDTVVFGLIERAKHPRNTPAYDPGYLAGGGHGHDASFAEMFVRESEAVQAK 93
Query: 65 AGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLFTVDG 124
AG+YQ +++PFFP +P L P ++ L+S A+ V+VNDAIW MYFNELLPL +G
Sbjct: 94 AGRYQSLQEIPFFPFRVPFTLAPPYNFTTELYSAAALVNVNDAIWSMYFNELLPLLAKNG 153
Query: 125 DDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNLLTFX 184
DDGNYA TV+ D CL+ALSRRI+ G+YVAEVKF Q+Y+ LIR KDT ALM LLT
Sbjct: 154 DDGNYAATVSSDLVCLQALSRRINYGRYVAEVKFIGDQQNYTTLIRNKDTDALMKLLTSE 213
Query: 185 XXXXXXXXXXXXXXXIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMPLTKD 244
+FGQNVTL+ + N+ + KV+P ++ KLYD WV+PLTK
Sbjct: 214 AQEDVVKRRVQKKAMVFGQNVTLDGPVETGNSNSSQTSFKVDPSLVYKLYDKWVIPLTKQ 273
Query: 245 VEVEYLLRRLD 255
VEVEYLL RLD
Sbjct: 274 VEVEYLLHRLD 284
>Os01g0764400 Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5)
(CM-1)
Length = 313
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 149/253 (58%), Gaps = 8/253 (3%)
Query: 6 LSLAAVRDALVREEDSIVFALIEXXXXXXXXXXXXXXXXXXXX---SLAEFFVREAEVLH 62
L+L +R +LVR+EDSI+F+L+E SL EF VRE E LH
Sbjct: 66 LTLDNIRTSLVRQEDSIIFSLLERAQFCYNADIYDKNAFHVDGFDGSLVEFMVRETEKLH 125
Query: 63 AKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLFTV 122
+ G+Y+ P++ PFFP+DLP PL P YPKVLH A S+++N IWKMYF+ELLP
Sbjct: 126 QQVGRYKSPDEHPFFPEDLPEPLLPPLQYPKVLHPIADSININKEIWKMYFDELLPRLVK 185
Query: 123 DGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNLLT 182
+G DGNY + D CL+ALS+RIH GK+VAE KF+++ + Y P I A+D LM+LLT
Sbjct: 186 EGSDGNYGSSALCDTICLQALSKRIHYGKFVAEAKFQESPEAYMPAIIAQDCDQLMHLLT 245
Query: 183 FXXXXXXXXXXXXXXXXIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMPLT 242
+ IFGQ V L E N K+ P ++++LY +MPLT
Sbjct: 246 YETVERAIEHRVEAKAKIFGQEVDL-----GAEDNGAPPMYKIRPSLVAELYSYRIMPLT 300
Query: 243 KDVEVEYLLRRLD 255
K+V+V YLLRRLD
Sbjct: 301 KEVQVAYLLRRLD 313
>Os12g0578200 Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5)
(CM-1)
Length = 332
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 143/253 (56%), Gaps = 11/253 (4%)
Query: 6 LSLAAVRDALVREEDSIVFALIEXXXXXXXXXX---XXXXXXXXXXSLAEFFVREAEVLH 62
L++ ++R L++ ED+I+F L+E SL EF V++ E +H
Sbjct: 88 LTIGSIRSTLMKHEDTIIFGLLERSQFCYNPDTYDPNASRIVRFNGSLVEFMVKKTEKMH 147
Query: 63 AKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLFTV 122
A+ G+Y+ P++ PFFP++L + P+ +Y VLH A+++++N IW +YF +LLP
Sbjct: 148 ARMGRYKSPDEHPFFPENLLEVVEPSVEYENVLHPAAANININKRIWDVYFGDLLPRLVK 207
Query: 123 DGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNLLT 182
+G DGN + D L+ALS+RIH GKYVAE KF+ A Y+P I KD+ LM LLT
Sbjct: 208 EGSDGNCGSSACWDMLILQALSKRIHYGKYVAEAKFQGAPDTYTPAILNKDSDKLMELLT 267
Query: 183 FXXXXXXXXXXXXXXXXIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMPLT 242
F FGQ V+ E + + K+ PE+ +LYD W+MPLT
Sbjct: 268 FAKVEDDVRARVMSKAMTFGQVVS--------EDLENEIKLKIEPELAVELYDKWIMPLT 319
Query: 243 KDVEVEYLLRRLD 255
K+V+V+YLL+RLD
Sbjct: 320 KEVQVQYLLKRLD 332
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,095,558
Number of extensions: 253611
Number of successful extensions: 618
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 4
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)