Os01g0764400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1).
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Os01g0764400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.01 | 0.453 | 11.8 | -0.686 | 2.27 | -0.664 | 0.836 | -0.987 | -0.51 | 7.81 | 70.01 | 1241 | -- | -- |
| 95.31 | 0.455 | 11.8 | -0.758 | 2.35 | -0.705 | 0.714 | -- | -0.513 | 7.83 | 70 | 1189 | -- | -- |
| 93.79 | 0.451 | 11.8 | -0.624 | 2.23 | -0.904 | -- | -0.663 | -0.548 | 7.66 | 76 | 2770 | -- | -- |
| 94.33 | 0.452 | 11.8 | -0.68 | 2.23 | -0.952 | -- | -- | -0.548 | 7.71 | 76 | 2752 | -- | -- |
| 360.88 | 0.885 | 11.9 | -0.646 | -- | -0.863 | -- | -0.49 | -0.532 | -- | 72.95 | 2841 | -- | -- |
| 113.86 | 0.5 | 11.8 | -0.674 | 2.24 | -- | 0.688 | -- | -0.459 | 7.53 | -- | -- | -- | -- |
| 115.18 | 0.503 | 11.8 | -0.658 | 2.24 | -- | -- | -- | -0.46 | 7.53 | -- | -- | -- | -- |
| 358.51 | 0.882 | 11.9 | -0.669 | -- | -1.21 | -- | -- | -0.563 | -- | 76.87 | 2872 | -- | -- |
| 107.78 | 0.484 | 11.8 | -- | 2.23 | -0.934 | -- | -- | -0.491 | 7.7 | 75.36 | 2771 | -- | -- |
| 384.51 | 0.916 | 11.9 | -0.624 | -- | -- | -- | -- | -0.425 | -- | -- | -- | -- | -- |
| 126.58 | 0.526 | 11.8 | -- | 2.24 | -- | -- | -- | -0.387 | 7.55 | -- | -- | -- | -- |
| 368.48 | 0.894 | 11.9 | -- | -- | -1.45 | -- | -- | -0.474 | -- | 78.41 | 2877 | -- | -- |
| 394.79 | 0.927 | 11.9 | -- | -- | -- | -- | -- | -0.356 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.59 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 5 | 86.35 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 14 | 87.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 17 | 87.54 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 17 |
| 19 | 87.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 20 | 87.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 22 | 87.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 23 | 87.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 3 |
| 27 | 87.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 29 | 87.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 32 | 87.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 38 | 87.92 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 42 | 88.07 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 48 | 88.16 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 49 | 88.17 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 53 | 88.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 54 | 88.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 57 | 88.26 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 72 | 88.42 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 116 | 89.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 118 | 89.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 143 | 89.36 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 152 | 89.43 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 153 | 89.43 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 167 | 89.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 175 | 89.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 177 | 89.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 180 | 89.60 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 188 | 89.69 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 189 | 89.69 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 11 |
| 193 | 89.72 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 204 | 89.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 205 | 89.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 206 | 89.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 207 | 89.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 210 | 89.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 17 |
| 211 | 89.85 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 219 | 89.90 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 5 | NA |
| 248 | 90.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 257 | 90.05 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 271 | 90.17 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 285 | 90.25 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 292 | 90.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 22 |
| 299 | 90.30 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 301 | 90.31 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 4 | NA |
| 303 | 90.32 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 4 | NA |
| 305 | 90.32 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 4 | NA |
| 366 | 90.61 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 369 | 90.62 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 3 | NA |
| 372 | 90.63 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 374 | 90.63 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 377 | 90.64 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 2 | NA |
| 379 | 90.64 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 383 | 90.65 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 3 |
| 384 | 90.66 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 2 | NA |
| 385 | 90.66 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 394 | 90.71 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 405 | 90.75 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 409 | 90.75 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 430 | 90.79 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 453 | 90.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 7 |
| 459 | 90.96 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 471 | 91.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 492 | 91.12 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 502 | 91.16 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 534 | 91.29 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 535 | 91.29 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 542 | 91.30 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 552 | 91.31 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 559 | 91.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 565 | 91.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 569 | 91.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 588 | 91.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 589 | 91.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 608 | 91.45 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 614 | 91.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 629 | 91.49 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 640 | 91.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 644 | 91.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 656 | 91.54 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 662 | 91.54 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 673 | 91.56 | wind | 5.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 678 | 91.57 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 698 | 91.60 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 721 | 91.65 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 754 | 91.74 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 760 | 91.74 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 10 |
| 770 | 91.76 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 800 | 91.80 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 808 | 91.82 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 811 | 91.83 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 816 | 91.83 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 909 | 92.08 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 911 | 92.08 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 958 | 92.15 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 960 | 92.15 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 977 | 92.18 | wind | 3.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 995 | 92.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 21 |