Os12g0578200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1).
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Os12g0578200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.11 | 0.336 | 2.8 | 0.00469 | 0.144 | -1.13 | -0.253 | -3.86 | 0.0515 | 7.56 | 9.365 | 89 | -- | -- |
| 53 | 0.339 | 2.78 | -0.00352 | 0.134 | -0.244 | -0.221 | -- | 0.0594 | 7.81 | 9.399 | 74 | -- | -- |
| 51.29 | 0.334 | 2.8 | -0.00216 | 0.144 | -1.1 | -- | -3.79 | 0.0514 | 7.55 | 9.366 | 89 | -- | -- |
| 53.07 | 0.339 | 2.78 | -0.00524 | 0.145 | -0.21 | -- | -- | 0.0592 | 7.57 | 9.373 | 74 | -- | -- |
| 52.33 | 0.337 | 2.8 | -0.00423 | -- | -0.965 | -- | -3.21 | 0.0543 | -- | 9.374 | 79 | -- | -- |
| 53.19 | 0.342 | 2.79 | -0.0189 | 0.144 | -- | -0.179 | -- | 0.0508 | 7.63 | -- | -- | -- | -- |
| 53.27 | 0.342 | 2.79 | -0.023 | 0.143 | -- | -- | -- | 0.0512 | 7.84 | -- | -- | -- | -- |
| 54.21 | 0.343 | 2.79 | -0.00598 | -- | -0.196 | -- | -- | 0.0594 | -- | 9.373 | 74 | -- | -- |
| 53.07 | 0.339 | 2.78 | -- | 0.145 | -0.212 | -- | -- | 0.0586 | 7.57 | 9.372 | 74 | -- | -- |
| 54.39 | 0.345 | 2.79 | -0.0214 | -- | -- | -- | -- | 0.0532 | -- | -- | -- | -- | -- |
| 53.29 | 0.341 | 2.79 | -- | 0.143 | -- | -- | -- | 0.0538 | 7.85 | -- | -- | -- | -- |
| 54.21 | 0.343 | 2.79 | -- | -- | -0.198 | -- | -- | 0.0601 | -- | 9.348 | 74 | -- | -- |
| 54.4 | 0.344 | 2.79 | -- | -- | -- | -- | -- | 0.0556 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.80 | temperature | 20.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 4 | 44.80 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 13 | 45.64 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 34 | 47.52 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 35 | 47.52 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 7 | 3 |
| 50 | 47.89 | radiation | 1.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 76 | 48.58 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 136 | 49.30 | humidity | 90.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 139 | 49.30 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 221 | 49.99 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 249 | 50.30 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 272 | 50.52 | wind | 5.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 273 | 50.52 | wind | 5.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 282 | 50.56 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 283 | 50.57 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 293 | 50.61 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 294 | 50.61 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 296 | 50.63 | humidity | 90.0 | 10 | > th | dose independent | rect. | 7 | 7 |
| 300 | 50.64 | wind | 9.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 318 | 50.67 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 324 | 50.67 | wind | 9.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 325 | 50.67 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 344 | 50.72 | wind | 5.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 354 | 50.74 | radiation | 20.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 420 | 50.91 | wind | 9.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 440 | 50.95 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 462 | 50.99 | humidity | 90.0 | 10 | > th | dose independent | rect. | 7 | 15 |
| 518 | 51.08 | wind | 9.0 | 90 | > th | dose independent | sin | 8 | NA |
| 621 | 51.13 | wind | 9.0 | 90 | < th | dose independent | sin | 5 | NA |
| 672 | 51.14 | temperature | 30.0 | 30 | < th | dose independent | rect. | 8 | 23 |
| 712 | 51.16 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 852 | 51.23 | wind | 7.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 895 | 51.25 | wind | 5.0 | 10 | < th | dose independent | rect. | 7 | 1 |