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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0441600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0425) R2 : 0.0104
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.196 (0.0895) R2dN8 : 0.0135 R2N8 : 0.0104
σ : 0.801
deviance : 294.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.35 0.752 3.4 -0.535 0.406 0.815 -1.19 -1.73 0.14 11.8 9.615 119 -- --
259.95 0.751 3.4 -0.496 0.394 0.832 0.49 -- 0.167 12.7 9.315 164 -- --
257.86 0.748 3.4 -0.55 0.354 0.772 -- -0.865 0.139 11.7 9.611 118 -- --
261.04 0.753 3.4 -0.501 0.392 0.825 -- -- 0.148 12.6 8.726 172 -- --
262.8 0.755 3.39 -0.412 -- 0.59 -- -0.73 0.205 -- 15.27 121 -- --
274.02 0.776 3.41 -0.485 0.473 -- -0.574 -- 0.133 1.81 -- -- -- --
275.3 0.777 3.41 -0.467 0.473 -- -- -- 0.136 1.83 -- -- -- --
264.91 0.758 3.39 -0.369 -- 0.579 -- -- 0.198 -- 14.04 129 -- --
267.67 0.762 3.4 -- 0.403 0.806 -- -- 0.187 12.7 8.728 177 -- --
288.86 0.794 3.4 -0.447 -- -- -- -- 0.147 -- -- -- -- --
281.04 0.784 3.39 -- 0.465 -- -- -- 0.188 1.81 -- -- -- --
269.06 0.764 3.39 -- -- 0.57 -- -- 0.227 -- 14.04 129 -- --
294.14 0.801 3.39 -- -- -- -- -- 0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.22 radiation 10.0 270 < th dose independent rect. 15 16
2 246.35 temperature 20.0 270 > th dose independent rect. 15 16
5 247.13 temperature 20.0 90 > th dose independent rect. 17 14
10 248.03 radiation 10.0 90 < th dose independent rect. 4 17
22 249.11 temperature 10.0 270 > th dose dependent rect. 16 15
32 249.84 temperature 20.0 90 > th dose dependent rect. 17 15
47 250.68 radiation 10.0 270 < th dose independent rect. 1 18
49 250.70 temperature 20.0 10 > th dose dependent rect. 17 16
51 250.80 radiation 20.0 90 < th dose dependent rect. 4 17
58 250.97 wind 7.0 30 > th dose independent rect. 17 3
77 251.56 wind 1.0 90 > th dose independent rect. 21 6
86 251.78 temperature 20.0 270 > th dose independent rect. 3 3
95 251.95 temperature 30.0 90 < th dose dependent rect. 21 6
98 251.99 radiation 30.0 270 < th dose dependent rect. 15 16
101 252.03 humidity 50.0 90 > th dose independent rect. 3 18
109 252.17 radiation 10.0 90 < th dose independent rect. 23 23
113 252.25 atmosphere 995.0 90 > th dose dependent rect. 21 7
117 252.29 temperature 20.0 90 > th dose independent rect. 4 17
127 252.43 wind 3.0 270 > th dose dependent rect. 17 1
134 252.53 radiation 10.0 10 < th dose independent rect. 4 18
139 252.55 humidity 50.0 90 > th dose dependent rect. 3 18
150 252.72 temperature 20.0 270 > th dose independent rect. 1 20
168 252.82 wind 9.0 1440 < th dose independent rect. 23 6
187 253.07 wind 1.0 90 > th dose independent rect. 21 8
197 253.14 wind 7.0 90 < th dose independent rect. 21 6
198 253.17 temperature 20.0 270 > th dose independent rect. 2 5
200 253.19 atmosphere 995.0 90 > th dose independent rect. 3 18
203 253.21 radiation 10.0 10 < th dose dependent rect. 6 16
209 253.28 temperature 15.0 270 > th dose dependent rect. 3 3
211 253.30 temperature 10.0 90 > th dose independent rect. 21 6
212 253.30 temperature 30.0 90 < th dose independent rect. 21 6
213 253.30 humidity 50.0 90 > th dose independent rect. 21 6
216 253.30 atmosphere 995.0 90 > th dose independent rect. 21 6
217 253.30 radiation 1.0 90 < th dose independent rect. 21 6
222 253.30 temperature 10.0 90 > th dose independent rect. 3 18
223 253.30 atmosphere 1015.0 90 < th dose independent rect. 3 18
224 253.30 radiation 1.0 90 < th dose dependent rect. 21 6
233 253.37 precipitation 0.1 90 < th dose independent rect. 21 6
235 253.37 precipitation 0.1 90 < th dose dependent rect. 21 6
242 253.42 precipitation 0.1 90 < th dose independent rect. 3 18
244 253.42 precipitation 0.1 90 < th dose dependent rect. 3 18
253 253.49 wind 9.0 90 < th dose independent rect. 3 18
254 253.52 humidity 70.0 30 > th dose independent rect. 4 17
255 253.54 wind 1.0 270 > th dose independent rect. 19 7
256 253.56 wind 5.0 270 > th dose independent rect. 17 1
337 253.94 temperature 20.0 270 > th dose independent rect. 13 8
373 254.16 radiation 10.0 270 < th dose independent rect. 14 5
379 254.19 radiation 20.0 90 < th dose independent rect. 3 8
383 254.22 radiation 10.0 270 < th dose independent rect. 16 2
391 254.25 temperature 10.0 270 > th dose dependent rect. 1 6
392 254.26 radiation 10.0 90 < th dose independent rect. 3 23
401 254.36 radiation 10.0 270 < th dose independent rect. 1 7
419 254.50 temperature 30.0 270 < th dose dependent rect. 19 7
481 254.73 humidity 70.0 270 > th dose dependent rect. 24 7
502 254.83 temperature 20.0 1440 > th dose independent rect. 5 1
507 254.85 temperature 20.0 1440 < th dose independent rect. 5 1
516 254.90 humidity 50.0 270 > th dose independent rect. 15 15
566 255.17 humidity 80.0 270 > th dose independent rect. 1 6
577 255.19 humidity 80.0 4320 > th dose independent rect. 22 1
611 255.35 radiation 20.0 90 < th dose dependent rect. 23 23
625 255.43 temperature 20.0 270 > th dose independent rect. 17 1
630 255.45 wind 7.0 270 < th dose independent rect. 19 8
647 255.49 humidity 60.0 90 > th dose dependent rect. 3 8
675 255.53 radiation 10.0 90 < th dose independent sin 0 NA
714 255.65 temperature 10.0 270 > th dose independent rect. 19 8
715 255.65 temperature 30.0 270 < th dose independent rect. 19 8
716 255.65 humidity 50.0 270 > th dose independent rect. 19 8
717 255.65 atmosphere 995.0 270 > th dose independent rect. 19 8
718 255.65 radiation 1.0 270 < th dose independent rect. 19 8
728 255.65 radiation 1.0 270 < th dose dependent rect. 19 8
741 255.69 humidity 90.0 270 > th dose independent rect. 3 2
743 255.69 wind 7.0 30 > th dose independent rect. 17 15
746 255.69 radiation 20.0 90 < th dose dependent rect. 14 7
776 255.73 wind 9.0 4320 > th dose dependent rect. 17 1
782 255.76 wind 9.0 4320 < th dose independent rect. 17 1
795 255.80 wind 1.0 270 > th dose independent rect. 21 3
797 255.81 radiation 10.0 90 < th dose dependent sin 23 NA
798 255.81 radiation 40.0 270 < th dose dependent rect. 13 6
827 255.85 radiation 40.0 90 < th dose dependent rect. 3 7
862 255.92 temperature 30.0 90 < th dose independent rect. 3 18
872 255.94 humidity 50.0 270 > th dose dependent rect. 1 18
929 256.06 atmosphere 1000.0 90 > th dose independent rect. 13 9
935 256.07 humidity 80.0 14400 > th dose dependent rect. 21 7
937 256.08 precipitation 0.1 270 < th dose independent rect. 19 8
941 256.08 precipitation 0.1 270 < th dose dependent rect. 19 8
945 256.10 humidity 70.0 90 > th dose independent rect. 15 6
951 256.11 radiation 1.0 270 > th dose independent rect. 7 9
960 256.13 radiation 40.0 270 < th dose independent rect. 12 8
965 256.14 wind 1.0 270 > th dose independent rect. 2 17
973 256.16 radiation 10.0 10 < th dose independent rect. 24 22
986 256.19 humidity 50.0 90 > th dose dependent rect. 17 16
991 256.21 wind 9.0 4320 > th dose independent rect. 17 1
995 256.22 wind 9.0 4320 > th dose dependent rect. 15 2