BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0441600 Os08g0441600|AK069725
(284 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0441600 Similar to Chorismate mutase CM2 (EC 5.4.99.5)... 541 e-154
Os02g0180500 Similar to Chorismate mutase CM2 (EC 5.4.99.5)... 276 9e-75
Os12g0578200 Similar to Chorismate mutase, chloroplast prec... 216 1e-56
Os01g0764400 Similar to Chorismate mutase, chloroplast prec... 201 5e-52
>Os08g0441600 Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase)
Length = 284
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/284 (92%), Positives = 263/284 (92%)
Query: 1 MAAAMILSCRYXXXXXXXXXXXXXXXXXXXXXDTVREFLTREEDTVVFGLIERAKHPRNT 60
MAAAMILSCRY DTVREFLTREEDTVVFGLIERAKHPRNT
Sbjct: 1 MAAAMILSCRYLLICSATLALLLLRLCSGLSLDTVREFLTREEDTVVFGLIERAKHPRNT 60
Query: 61 PAYDPGYLAGGGHGHDASFAEMFVRESEAVQAKAGRYQSLQEIPFFPFRVPFTLAPPYNF 120
PAYDPGYLAGGGHGHDASFAEMFVRESEAVQAKAGRYQSLQEIPFFPFRVPFTLAPPYNF
Sbjct: 61 PAYDPGYLAGGGHGHDASFAEMFVRESEAVQAKAGRYQSLQEIPFFPFRVPFTLAPPYNF 120
Query: 121 TTELYSAAALVNVNDAIWSMYFNELLPLLAKNGDDGNYAATVSSDLVCLQALSRRINYGR 180
TTELYSAAALVNVNDAIWSMYFNELLPLLAKNGDDGNYAATVSSDLVCLQALSRRINYGR
Sbjct: 121 TTELYSAAALVNVNDAIWSMYFNELLPLLAKNGDDGNYAATVSSDLVCLQALSRRINYGR 180
Query: 181 YVAEVKFIGDQQNYTTLIRNKDTDALMKLLTSEAQEDVVKRRVQKKAMVFGQNVTLDGPV 240
YVAEVKFIGDQQNYTTLIRNKDTDALMKLLTSEAQEDVVKRRVQKKAMVFGQNVTLDGPV
Sbjct: 181 YVAEVKFIGDQQNYTTLIRNKDTDALMKLLTSEAQEDVVKRRVQKKAMVFGQNVTLDGPV 240
Query: 241 ETGNSNSSQTSFKVDPSLVYKLYDKWVIPLTKQVEVEYLLHRLD 284
ETGNSNSSQTSFKVDPSLVYKLYDKWVIPLTKQVEVEYLLHRLD
Sbjct: 241 ETGNSNSSQTSFKVDPSLVYKLYDKWVIPLTKQVEVEYLLHRLD 284
>Os02g0180500 Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase)
Length = 255
Score = 276 bits (707), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 144/251 (57%), Positives = 179/251 (71%), Gaps = 5/251 (1%)
Query: 34 TVREFLTREEDTVVFGLIERAKHPRNTPAYDPGYLAGGGHGHDASFAEMFVRESEAVQAK 93
VR+ L REED++VF LIERA+ PRN PAY AGG S AE FVRE+E + AK
Sbjct: 10 AVRDALVREEDSIVFALIERARRPRNAPAYAAAAAAGG-----RSLAEFFVREAEVLHAK 64
Query: 94 AGRYQSLQEIPFFPFRVPFTLAPPYNFTTELYSAAALVNVNDAIWSMYFNELLPLLAKNG 153
AG+YQ +++PFFP +P L P ++ L+S A+ V+VNDAIW MYFNELLPL +G
Sbjct: 65 AGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLFTVDG 124
Query: 154 DDGNYAATVSSDLVCLQALSRRINYGRYVAEVKFIGDQQNYTTLIRNKDTDALMKLLTSE 213
DDGNYA TV+ D CL+ALSRRI+ G+YVAEVKF Q+Y+ LIR KDT ALM LLT +
Sbjct: 125 DDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNLLTFK 184
Query: 214 AQEDVVKRRVQKKAMVFGQNVTLDGPVETGNSNSSQTSFKVDPSLVYKLYDKWVIPLTKQ 273
A E+ VKRRV+KKA +FGQNVTL+ + N+ + KV+P ++ KLYD WV+PLTK
Sbjct: 185 AVEEKVKRRVEKKARIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMPLTKD 244
Query: 274 VEVEYLLHRLD 284
VEVEYLL RLD
Sbjct: 245 VEVEYLLRRLD 255
>Os12g0578200 Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5)
(CM-1)
Length = 332
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 155/251 (61%), Gaps = 10/251 (3%)
Query: 34 TVREFLTREEDTVVFGLIERAKHPRNTPAYDPGYLAGGGHGHDASFAEMFVRESEAVQAK 93
++R L + EDT++FGL+ER++ N YDP A + S E V+++E + A+
Sbjct: 92 SIRSTLMKHEDTIIFGLLERSQFCYNPDTYDPN--ASRIVRFNGSLVEFMVKKTEKMHAR 149
Query: 94 AGRYQSLQEIPFFPFRVPFTLAPPYNFTTELYSAAALVNVNDAIWSMYFNELLPLLAKNG 153
GRY+S E PFFP + + P + L+ AAA +N+N IW +YF +LLP L K G
Sbjct: 150 MGRYKSPDEHPFFPENLLEVVEPSVEYENVLHPAAANININKRIWDVYFGDLLPRLVKEG 209
Query: 154 DDGNYAATVSSDLVCLQALSRRINYGRYVAEVKFIGDQQNYTTLIRNKDTDALMKLLTSE 213
DGN ++ D++ LQALS+RI+YG+YVAE KF G YT I NKD+D LM+LLT
Sbjct: 210 SDGNCGSSACWDMLILQALSKRIHYGKYVAEAKFQGAPDTYTPAILNKDSDKLMELLTFA 269
Query: 214 AQEDVVKRRVQKKAMVFGQNVTLDGPVETGNSNSSQTSFKVDPSLVYKLYDKWVIPLTKQ 273
ED V+ RV KAM FGQ V+ D ++ K++P L +LYDKW++PLTK+
Sbjct: 270 KVEDDVRARVMSKAMTFGQVVSEDL--------ENEIKLKIEPELAVELYDKWIMPLTKE 321
Query: 274 VEVEYLLHRLD 284
V+V+YLL RLD
Sbjct: 322 VQVQYLLKRLD 332
>Os01g0764400 Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5)
(CM-1)
Length = 313
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 150/252 (59%), Gaps = 7/252 (2%)
Query: 33 DTVREFLTREEDTVVFGLIERAKHPRNTPAYDPGYLAGGGHGHDASFAEMFVRESEAVQA 92
D +R L R+ED+++F L+ERA+ N YD A G D S E VRE+E +
Sbjct: 69 DNIRTSLVRQEDSIIFSLLERAQFCYNADIYDKN--AFHVDGFDGSLVEFMVRETEKLHQ 126
Query: 93 KAGRYQSLQEIPFFPFRVPFTLAPPYNFTTELYSAAALVNVNDAIWSMYFNELLPLLAKN 152
+ GRY+S E PFFP +P L PP + L+ A +N+N IW MYF+ELLP L K
Sbjct: 127 QVGRYKSPDEHPFFPEDLPEPLLPPLQYPKVLHPIADSININKEIWKMYFDELLPRLVKE 186
Query: 153 GDDGNYAATVSSDLVCLQALSRRINYGRYVAEVKFIGDQQNYTTLIRNKDTDALMKLLTS 212
G DGNY ++ D +CLQALS+RI+YG++VAE KF + Y I +D D LM LLT
Sbjct: 187 GSDGNYGSSALCDTICLQALSKRIHYGKFVAEAKFQESPEAYMPAIIAQDCDQLMHLLTY 246
Query: 213 EAQEDVVKRRVQKKAMVFGQNVTLDGPVETGNSNSSQTSFKVDPSLVYKLYDKWVIPLTK 272
E E ++ RV+ KA +FGQ V L N + +K+ PSLV +LY ++PLTK
Sbjct: 247 ETVERAIEHRVEAKAKIFGQEVDL-----GAEDNGAPPMYKIRPSLVAELYSYRIMPLTK 301
Query: 273 QVEVEYLLHRLD 284
+V+V YLL RLD
Sbjct: 302 EVQVAYLLRRLD 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,812,413
Number of extensions: 337047
Number of successful extensions: 800
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 4
Length of query: 284
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 184
Effective length of database: 11,814,401
Effective search space: 2173849784
Effective search space used: 2173849784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)