BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0555200 Os12g0555200|AK070762
(158 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0555200 Similar to Probenazole-inducible protein PBZ1 322 5e-89
Os12g0555500 Probenazole-inducible protein PBZ1 247 3e-66
Os12g0555000 Similar to Probenazole-inducible protein PBZ1 222 7e-59
Os12g0555100 Similar to Probenazole-inducible protein PBZ1 209 8e-55
Os12g0555300 Similar to Probenazole-inducible protein PBZ1 204 2e-53
>Os12g0555200 Similar to Probenazole-inducible protein PBZ1
Length = 158
Score = 322 bits (826), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MAPAFVSDERAVAVSVERLWKVCLDVHSLPKVCAGFIDAVEVEGNGGPGTIHIMKLNPAA 60
MAPAFVSDERAVAVSVERLWKVCLDVHSLPKVCAGFIDAVEVEGNGGPGTIHIMKLNPAA
Sbjct: 1 MAPAFVSDERAVAVSVERLWKVCLDVHSLPKVCAGFIDAVEVEGNGGPGTIHIMKLNPAA 60
Query: 61 DAGSVYKTKIVVCDSATHVLKVEVLEVKSRVGNLKSHSTETKLEATGDATCVAKLTVEYE 120
DAGSVYKTKIVVCDSATHVLKVEVLEVKSRVGNLKSHSTETKLEATGDATCVAKLTVEYE
Sbjct: 61 DAGSVYKTKIVVCDSATHVLKVEVLEVKSRVGNLKSHSTETKLEATGDATCVAKLTVEYE 120
Query: 121 LEDGASLSPEQEKMIVDGYFSMLQMIEAYLVAHPAEYA 158
LEDGASLSPEQEKMIVDGYFSMLQMIEAYLVAHPAEYA
Sbjct: 121 LEDGASLSPEQEKMIVDGYFSMLQMIEAYLVAHPAEYA 158
>Os12g0555500 Probenazole-inducible protein PBZ1
Length = 158
Score = 247 bits (630), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 117/158 (74%), Positives = 134/158 (84%)
Query: 1 MAPAFVSDERAVAVSVERLWKVCLDVHSLPKVCAGFIDAVEVEGNGGPGTIHIMKLNPAA 60
MAPA VSDE AVAVS ERLWK +D +LPK CAG +D + VEGNGGPGTI+ MKLNPAA
Sbjct: 1 MAPACVSDEHAVAVSAERLWKAFMDASTLPKACAGLVDDIAVEGNGGPGTIYTMKLNPAA 60
Query: 61 DAGSVYKTKIVVCDSATHVLKVEVLEVKSRVGNLKSHSTETKLEATGDATCVAKLTVEYE 120
GS YKT++ VCD+A+HVLK +VLE +S+VG LKSHSTETKLEATGD +CVAKL VEYE
Sbjct: 61 GVGSTYKTRVAVCDAASHVLKSDVLEAESKVGKLKSHSTETKLEATGDGSCVAKLKVEYE 120
Query: 121 LEDGASLSPEQEKMIVDGYFSMLQMIEAYLVAHPAEYA 158
LEDG+SLSPE+EK IVDGY+ ML+MIE YLVAHPAEYA
Sbjct: 121 LEDGSSLSPEKEKDIVDGYYGMLKMIEDYLVAHPAEYA 158
>Os12g0555000 Similar to Probenazole-inducible protein PBZ1
Length = 160
Score = 222 bits (566), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 105/160 (65%), Positives = 129/160 (80%), Gaps = 2/160 (1%)
Query: 1 MAPAFVSDERAVAVSVERLWKVCLDVHSLPKVCAGFIDAVEVEGNGGPGTIHIMKLNPAA 60
MAP +SDERAV+VS ER+WKV D ++PKVCAGFIDA+EVEG+GG GT+ MKLNPA
Sbjct: 1 MAPVSISDERAVSVSAERVWKVFSDAPAMPKVCAGFIDAIEVEGDGGAGTVTTMKLNPAV 60
Query: 61 DAGSVYKTKIVVCDSATHVLKVEVLEVK--SRVGNLKSHSTETKLEATGDATCVAKLTVE 118
D G +KT++V D+A H++K EVL+V S+VG LKSH TETK+EA G +C+AK+ VE
Sbjct: 61 DDGGSFKTRVVARDNAAHIIKSEVLDVPAGSKVGKLKSHVTETKIEAAGAGSCLAKINVE 120
Query: 119 YELEDGASLSPEQEKMIVDGYFSMLQMIEAYLVAHPAEYA 158
YELEDG SLSPE+EK+I+DGYF ML+MIE YLVAHP EYA
Sbjct: 121 YELEDGGSLSPEKEKLILDGYFGMLKMIEDYLVAHPTEYA 160
>Os12g0555100 Similar to Probenazole-inducible protein PBZ1
Length = 158
Score = 209 bits (531), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/159 (64%), Positives = 125/159 (78%), Gaps = 2/159 (1%)
Query: 1 MAPAFVSDERAVAVSVERLWKVCLDVHSLPKVCAGFIDAVEVEGNGGPGTIHIMKLNPAA 60
MAP +SDER+VAVS ER WKV + ++PKVCAGF DA EVEG+GGPGT+ I+K NPA
Sbjct: 1 MAPVCISDERSVAVSAERFWKVFSNPPAMPKVCAGFFDAAEVEGDGGPGTVVILKFNPAV 60
Query: 61 DAGSVYKTKIVVCDSATHVLKVEVLEVK-SRVGNLKSHSTETKLEATGDATCVAKLTVEY 119
G +YKT++V D+A+H LK EVLEV R G LK+H TETKLEATG +C+AKL VE
Sbjct: 61 KQG-LYKTRVVARDNASHFLKSEVLEVALGRAGKLKTHLTETKLEATGAGSCMAKLRVEC 119
Query: 120 ELEDGASLSPEQEKMIVDGYFSMLQMIEAYLVAHPAEYA 158
E EDG SLSPE++K+I++GYF ML+MIE YLVAHPAEYA
Sbjct: 120 EPEDGGSLSPEKQKIILEGYFGMLKMIENYLVAHPAEYA 158
>Os12g0555300 Similar to Probenazole-inducible protein PBZ1
Length = 130
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 110/130 (84%)
Query: 29 LPKVCAGFIDAVEVEGNGGPGTIHIMKLNPAADAGSVYKTKIVVCDSATHVLKVEVLEVK 88
+PKVCAGF+D + VEGNGGPGTI+ MKLNP A G+ YKT++ VCD+A VLK EVLE +
Sbjct: 1 MPKVCAGFVDDIVVEGNGGPGTIYTMKLNPDAGVGNTYKTRVAVCDNAARVLKSEVLEAE 60
Query: 89 SRVGNLKSHSTETKLEATGDATCVAKLTVEYELEDGASLSPEQEKMIVDGYFSMLQMIEA 148
S+VG LKSHSTETKLE TGD +CVAKL VEYEL DG+SLSPEQEK +VDGYF ML+M+EA
Sbjct: 61 SKVGKLKSHSTETKLEGTGDGSCVAKLKVEYELADGSSLSPEQEKTMVDGYFGMLKMMEA 120
Query: 149 YLVAHPAEYA 158
YL AHPAE+A
Sbjct: 121 YLAAHPAEFA 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,471,073
Number of extensions: 206088
Number of successful extensions: 527
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 5
Length of query: 158
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 65
Effective length of database: 12,179,899
Effective search space: 791693435
Effective search space used: 791693435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)