BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0555000 Os12g0555000|AK061606
(160 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0555000 Similar to Probenazole-inducible protein PBZ1 323 3e-89
Os12g0555100 Similar to Probenazole-inducible protein PBZ1 245 1e-65
Os12g0555500 Probenazole-inducible protein PBZ1 226 8e-60
Os12g0555200 Similar to Probenazole-inducible protein PBZ1 222 7e-59
Os12g0555300 Similar to Probenazole-inducible protein PBZ1 181 2e-46
>Os12g0555000 Similar to Probenazole-inducible protein PBZ1
Length = 160
Score = 323 bits (829), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MAPVSISDERAVSVSAERVWKVFSDAPAMPKVCAGFIDAIEVEGDGGAGTVTTMKLNPAV 60
MAPVSISDERAVSVSAERVWKVFSDAPAMPKVCAGFIDAIEVEGDGGAGTVTTMKLNPAV
Sbjct: 1 MAPVSISDERAVSVSAERVWKVFSDAPAMPKVCAGFIDAIEVEGDGGAGTVTTMKLNPAV 60
Query: 61 DDGGSFKTRVVARDNAAHIIKSEVLDVPAGSKVGKLKSHVTETKIEAAGAGSCLAKINVE 120
DDGGSFKTRVVARDNAAHIIKSEVLDVPAGSKVGKLKSHVTETKIEAAGAGSCLAKINVE
Sbjct: 61 DDGGSFKTRVVARDNAAHIIKSEVLDVPAGSKVGKLKSHVTETKIEAAGAGSCLAKINVE 120
Query: 121 YELEDGGSLSPEKEKLILDGYFGMLKMIEDYLVAHPTEYA 160
YELEDGGSLSPEKEKLILDGYFGMLKMIEDYLVAHPTEYA
Sbjct: 121 YELEDGGSLSPEKEKLILDGYFGMLKMIEDYLVAHPTEYA 160
>Os12g0555100 Similar to Probenazole-inducible protein PBZ1
Length = 158
Score = 245 bits (625), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/160 (74%), Positives = 137/160 (85%), Gaps = 2/160 (1%)
Query: 1 MAPVSISDERAVSVSAERVWKVFSDAPAMPKVCAGFIDAIEVEGDGGAGTVTTMKLNPAV 60
MAPV ISDER+V+VSAER WKVFS+ PAMPKVCAGF DA EVEGDGG GTV +K NPAV
Sbjct: 1 MAPVCISDERSVAVSAERFWKVFSNPPAMPKVCAGFFDAAEVEGDGGPGTVVILKFNPAV 60
Query: 61 DDGGSFKTRVVARDNAAHIIKSEVLDVPAGSKVGKLKSHVTETKIEAAGAGSCLAKINVE 120
G +KTRVVARDNA+H +KSEVL+V G + GKLK+H+TETK+EA GAGSC+AK+ VE
Sbjct: 61 KQG-LYKTRVVARDNASHFLKSEVLEVALG-RAGKLKTHLTETKLEATGAGSCMAKLRVE 118
Query: 121 YELEDGGSLSPEKEKLILDGYFGMLKMIEDYLVAHPTEYA 160
E EDGGSLSPEK+K+IL+GYFGMLKMIE+YLVAHP EYA
Sbjct: 119 CEPEDGGSLSPEKQKIILEGYFGMLKMIENYLVAHPAEYA 158
>Os12g0555500 Probenazole-inducible protein PBZ1
Length = 158
Score = 226 bits (575), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 129/160 (80%), Gaps = 2/160 (1%)
Query: 1 MAPVSISDERAVSVSAERVWKVFSDAPAMPKVCAGFIDAIEVEGDGGAGTVTTMKLNPAV 60
MAP +SDE AV+VSAER+WK F DA +PK CAG +D I VEG+GG GT+ TMKLNPA
Sbjct: 1 MAPACVSDEHAVAVSAERLWKAFMDASTLPKACAGLVDDIAVEGNGGPGTIYTMKLNPAA 60
Query: 61 DDGGSFKTRVVARDNAAHIIKSEVLDVPAGSKVGKLKSHVTETKIEAAGAGSCLAKINVE 120
G ++KTRV D A+H++KS+VL+ A SKVGKLKSH TETK+EA G GSC+AK+ VE
Sbjct: 61 GVGSTYKTRVAVCDAASHVLKSDVLE--AESKVGKLKSHSTETKLEATGDGSCVAKLKVE 118
Query: 121 YELEDGGSLSPEKEKLILDGYFGMLKMIEDYLVAHPTEYA 160
YELEDG SLSPEKEK I+DGY+GMLKMIEDYLVAHP EYA
Sbjct: 119 YELEDGSSLSPEKEKDIVDGYYGMLKMIEDYLVAHPAEYA 158
>Os12g0555200 Similar to Probenazole-inducible protein PBZ1
Length = 158
Score = 222 bits (566), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 105/160 (65%), Positives = 129/160 (80%), Gaps = 2/160 (1%)
Query: 1 MAPVSISDERAVSVSAERVWKVFSDAPAMPKVCAGFIDAIEVEGDGGAGTVTTMKLNPAV 60
MAP +SDERAV+VS ER+WKV D ++PKVCAGFIDA+EVEG+GG GT+ MKLNPA
Sbjct: 1 MAPAFVSDERAVAVSVERLWKVCLDVHSLPKVCAGFIDAVEVEGNGGPGTIHIMKLNPAA 60
Query: 61 DDGGSFKTRVVARDNAAHIIKSEVLDVPAGSKVGKLKSHVTETKIEAAGAGSCLAKINVE 120
D G +KT++V D+A H++K EVL+V S+VG LKSH TETK+EA G +C+AK+ VE
Sbjct: 61 DAGSVYKTKIVVCDSATHVLKVEVLEVK--SRVGNLKSHSTETKLEATGDATCVAKLTVE 118
Query: 121 YELEDGGSLSPEKEKLILDGYFGMLKMIEDYLVAHPTEYA 160
YELEDG SLSPE+EK+I+DGYF ML+MIE YLVAHP EYA
Sbjct: 119 YELEDGASLSPEQEKMIVDGYFSMLQMIEAYLVAHPAEYA 158
>Os12g0555300 Similar to Probenazole-inducible protein PBZ1
Length = 130
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/132 (67%), Positives = 105/132 (79%), Gaps = 2/132 (1%)
Query: 29 MPKVCAGFIDAIEVEGDGGAGTVTTMKLNPAVDDGGSFKTRVVARDNAAHIIKSEVLDVP 88
MPKVCAGF+D I VEG+GG GT+ TMKLNP G ++KTRV DNAA ++KSEVL+
Sbjct: 1 MPKVCAGFVDDIVVEGNGGPGTIYTMKLNPDAGVGNTYKTRVAVCDNAARVLKSEVLE-- 58
Query: 89 AGSKVGKLKSHVTETKIEAAGAGSCLAKINVEYELEDGGSLSPEKEKLILDGYFGMLKMI 148
A SKVGKLKSH TETK+E G GSC+AK+ VEYEL DG SLSPE+EK ++DGYFGMLKM+
Sbjct: 59 AESKVGKLKSHSTETKLEGTGDGSCVAKLKVEYELADGSSLSPEQEKTMVDGYFGMLKMM 118
Query: 149 EDYLVAHPTEYA 160
E YL AHP E+A
Sbjct: 119 EAYLAAHPAEFA 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,225,227
Number of extensions: 279070
Number of successful extensions: 559
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 5
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)