BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0540100 Os12g0540100|J065058C24
(53 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0378200 120 2e-28
Os12g0540100 Conserved hypothetical protein 112 6e-26
Os08g0506250 109 4e-25
Os01g0324200 Conserved hypothetical protein 105 7e-24
Os06g0549100 102 6e-23
Os12g0432300 99 7e-22
Os09g0344280 98 2e-21
Os01g0312300 94 2e-20
Os02g0471400 92 9e-20
Os10g0492966 91 2e-19
Os11g0421950 88 1e-18
Os10g0378500 Conserved hypothetical protein 86 8e-18
Os04g0276100 Conserved hypothetical protein 84 3e-17
Os11g0284533 77 3e-15
Os01g0557850 74 2e-14
Os08g0114900 73 5e-14
Os01g0804200 Cytochrome P450 family protein 67 2e-12
Os08g0254700 67 4e-12
Os06g0119500 65 9e-12
Os10g0352500 Hypothetical protein 64 3e-11
Os11g0457800 64 3e-11
Os02g0630701 Conserved hypothetical protein 62 9e-11
>Os08g0378200
Length = 831
Score = 120 bits (302), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/53 (94%), Positives = 52/53 (98%)
Query: 1 MVIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
MVIFRATHWLRFWAQLQRCEDDGEFLKVACRKL+SMVMQLFANYGWRFTNR +
Sbjct: 779 MVIFRATHWLRFWAQLQRCEDDGEFLKVACRKLESMVMQLFANYGWRFTNRLQ 831
>Os12g0540100 Conserved hypothetical protein
Length = 53
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MVIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
MVIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK
Sbjct: 1 MVIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
>Os08g0506250
Length = 90
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/53 (94%), Positives = 52/53 (98%)
Query: 1 MVIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
MVIFRATHWLRFWAQLQRCEDDGEFLKVACRKL+SMVMQLFANYGWRFTNR +
Sbjct: 38 MVIFRATHWLRFWAQLQRCEDDGEFLKVACRKLESMVMQLFANYGWRFTNRLQ 90
>Os01g0324200 Conserved hypothetical protein
Length = 618
Score = 105 bits (262), Expect = 7e-24, Method: Composition-based stats.
Identities = 43/52 (82%), Positives = 49/52 (94%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
VIFRATHWLRFWAQLQRC++D +FLKVACRKL++ VMQLFANYGWRFTNR +
Sbjct: 567 VIFRATHWLRFWAQLQRCDEDEDFLKVACRKLETTVMQLFANYGWRFTNRLQ 618
>Os06g0549100
Length = 136
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/52 (88%), Positives = 48/52 (92%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
VIFRA HWLRFWAQLQRCEDDGEFL VACRKL+S VMQLFANYGWRFTNR +
Sbjct: 85 VIFRAMHWLRFWAQLQRCEDDGEFLMVACRKLESTVMQLFANYGWRFTNRLQ 136
>Os12g0432300
Length = 782
Score = 99.0 bits (245), Expect = 7e-22, Method: Composition-based stats.
Identities = 38/52 (73%), Positives = 47/52 (90%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
VIF+ +WLRFWA+LQ+CE+DGE +KVACRKL++ VMQLFANYGWRFTNR +
Sbjct: 731 VIFKVIYWLRFWAKLQKCEEDGELMKVACRKLETTVMQLFANYGWRFTNRLE 782
>Os09g0344280
Length = 71
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 47/50 (94%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNR 51
IFRA HWLRFWAQLQRC++DGEFLKVACRKL++MV QL+ANYGWRFTNR
Sbjct: 20 AIFRAIHWLRFWAQLQRCDEDGEFLKVACRKLETMVTQLYANYGWRFTNR 69
>Os01g0312300
Length = 213
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/52 (75%), Positives = 47/52 (90%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
VIFRAT+WLR WAQLQR ++GEF+KVAC+KL++MVMQLFANYGW FTNR +
Sbjct: 162 VIFRATYWLRLWAQLQRSNENGEFIKVACQKLETMVMQLFANYGWGFTNRLQ 213
>Os02g0471400
Length = 149
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 48/52 (92%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
VIF+ T+WL+FWA+LQ+CE++GE +KVACRKL++ VMQLFANYGWRFTNR +
Sbjct: 98 VIFKVTYWLQFWAKLQKCEENGELMKVACRKLETTVMQLFANYGWRFTNRLE 149
>Os10g0492966
Length = 54
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 49/52 (94%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
VIF+AT+WLRFWA+LQ+C+DDGEF+KV CRKL++ VMQ+FAN+GWRFTNR +
Sbjct: 3 VIFKATYWLRFWAKLQKCKDDGEFMKVVCRKLETTVMQIFANHGWRFTNRLE 54
>Os11g0421950
Length = 51
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/44 (88%), Positives = 44/44 (100%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYG 45
VIFRATHWLRFWAQLQRC++DGEFLKVACRKL++MVMQL+ANYG
Sbjct: 8 VIFRATHWLRFWAQLQRCDEDGEFLKVACRKLETMVMQLYANYG 51
>Os10g0378500 Conserved hypothetical protein
Length = 62
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 45/52 (86%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
VIFRAT+WLR W QLQ+ E+DG FL VACR L++MVMQLFANYGWRFTNR +
Sbjct: 1 VIFRATYWLRQWVQLQKYEEDGVFLNVACRNLETMVMQLFANYGWRFTNRLE 52
>Os04g0276100 Conserved hypothetical protein
Length = 58
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
VIFRATHWLR WA LQ+C ++GE LKVACR ++MVMQLF N+GWRFTNR +
Sbjct: 7 VIFRATHWLRSWALLQKCNEEGERLKVACRNFEAMVMQLFTNFGWRFTNRIQ 58
>Os11g0284533
Length = 733
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/68 (58%), Positives = 44/68 (64%), Gaps = 16/68 (23%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSM--------------VMQLFAN--YG 45
VIFRATHWLRFWAQLQRCEDD EFLKVA RKL+SM VM FA+
Sbjct: 655 VIFRATHWLRFWAQLQRCEDDREFLKVAYRKLESMRTTHTFTIKQFKPAVMNQFASTTTK 714
Query: 46 WRFTNRFK 53
W F +RF+
Sbjct: 715 WIFRDRFE 722
>Os01g0557850
Length = 402
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 41/52 (78%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWRFTNRFK 53
V+FRAT+WLR WAQLQR ++D + + CRKL++ +M LFAN+GWRF+ R +
Sbjct: 351 VLFRATYWLRGWAQLQRHDEDIKLINDECRKLETTIMHLFANFGWRFSIRIQ 402
>Os08g0114900
Length = 1091
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/34 (85%), Positives = 33/34 (97%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKS 35
VIFRATHWLRFWAQLQRC++D EFLKVACRKL++
Sbjct: 1016 VIFRATHWLRFWAQLQRCDEDEEFLKVACRKLET 1049
>Os01g0804200 Cytochrome P450 family protein
Length = 538
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/29 (100%), Positives = 29/29 (100%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVAC 30
VIFRATHWLRFWAQLQRCEDDGEFLKVAC
Sbjct: 504 VIFRATHWLRFWAQLQRCEDDGEFLKVAC 532
>Os08g0254700
Length = 55
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYG 45
VIFRATHWLRFWAQLQRC++ EFLKVACRKL++ V + + G
Sbjct: 7 VIFRATHWLRFWAQLQRCDEYEEFLKVACRKLETTVQHVGSGVG 50
>Os06g0119500
Length = 506
Score = 65.5 bits (158), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/29 (89%), Positives = 28/29 (96%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVAC 30
VIFRATHWLRFWAQLQRC++D EFLKVAC
Sbjct: 478 VIFRATHWLRFWAQLQRCDEDEEFLKVAC 506
>Os10g0352500 Hypothetical protein
Length = 72
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVMQLFANYGWR 47
VIFRATHWLRFWAQLQR ++DGEFLKVACRK S ++FA + R
Sbjct: 11 VIFRATHWLRFWAQLQRRDEDGEFLKVACRKPDSN-QRMFAYHPCR 55
>Os11g0457800
Length = 118
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 32/36 (88%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMV 37
VIFRAT+WLR WAQLQ+CE+DGEFL VACR L++ V
Sbjct: 68 VIFRATYWLRLWAQLQKCEEDGEFLNVACRNLETTV 103
>Os02g0630701 Conserved hypothetical protein
Length = 106
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 2 VIFRATHWLRFWAQLQRCEDDGEFLKVACRKLKSMVM 38
VIFR T+WLRFWAQLQRC++D E LKVAC+KL++ V+
Sbjct: 70 VIFRVTYWLRFWAQLQRCDEDEELLKVACQKLETTVI 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.336 0.140 0.503
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,763,489
Number of extensions: 43104
Number of successful extensions: 226
Number of sequences better than 1.0e-10: 23
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 23
Length of query: 53
Length of database: 17,035,801
Length adjustment: 26
Effective length of query: 27
Effective length of database: 15,678,237
Effective search space: 423312399
Effective search space used: 423312399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 149 (62.0 bits)