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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0540100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.025) R2 : 0.313
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.761 (0.0527) R2dN8 : 0.405 R2N8 : 0.313
σ : 0.472
deviance : 102.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.75 0.422 3.23 -1.13 0.147 0.975 -0.902 -7.52 0.585 19.9 26.84 270 -- --
88.11 0.441 3.14 -0.401 0.288 0.27 -1.28 -- 0.726 18.5 26.45 96 -- --
81.69 0.421 3.24 -1.17 0.235 0.923 -- -8.6 0.576 17.3 27.1 337 -- --
91.64 0.446 3.14 -0.367 0.315 0.144 -- -- 0.725 17.3 26.3 83 -- --
83.5 0.426 3.24 -1.25 -- 1.1 -- -8.63 0.556 -- 26.8 337 -- --
89.27 0.443 3.14 -0.358 0.354 -- -1.14 -- 0.733 18 -- -- -- --
91.98 0.449 3.14 -0.345 0.359 -- -- -- 0.73 17 -- -- -- --
95.31 0.455 3.14 -0.412 -- 0.375 -- -- 0.707 -- 25.8 110 -- --
95.06 0.454 3.14 -- 0.345 0.0638 -- -- 0.766 17.1 26.4 83 -- --
98.75 0.464 3.14 -0.358 -- -- -- -- 0.721 -- -- -- -- --
95.12 0.456 3.13 -- 0.365 -- -- -- 0.768 17 -- -- -- --
99.62 0.465 3.13 -- -- 0.331 -- -- 0.757 -- 25.8 131 -- --
102.13 0.472 3.13 -- -- -- -- -- 0.761 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.43 temperature 25.0 10 > th dose independent rect. 20 13
4 75.48 temperature 25.0 10 < th dose independent sin 9 NA
5 75.53 temperature 25.0 10 > th dose independent sin 9 NA
6 75.67 temperature 25.0 10 > th dose independent rect. 22 11
16 76.24 temperature 25.0 10 < th dose independent rect. 20 12
37 77.23 temperature 25.0 10 > th dose independent rect. 22 9
49 77.72 humidity 90.0 4320 < th dose dependent rect. 3 1
79 79.18 humidity 80.0 4320 > th dose independent rect. 22 2
80 79.19 temperature 25.0 720 > th dose dependent rect. 7 4
82 79.40 temperature 20.0 10 > th dose independent rect. 2 1
86 79.48 temperature 25.0 90 > th dose dependent rect. 2 1
88 79.50 temperature 30.0 270 > th dose independent rect. 12 2
92 79.59 radiation 40.0 90 < th dose dependent rect. 3 22
94 79.62 humidity 90.0 4320 < th dose dependent rect. 22 7
97 79.68 wind 1.0 30 > th dose independent rect. 15 23
99 79.70 wind 3.0 10 < th dose independent rect. 2 1
102 79.78 atmosphere 1000.0 30 > th dose independent rect. 2 1
104 79.78 temperature 25.0 270 > th dose dependent rect. 9 6
107 79.80 humidity 80.0 4320 < th dose independent rect. 22 2
110 79.81 humidity 80.0 10 > th dose independent rect. 2 1
115 79.82 temperature 25.0 720 > th dose dependent rect. 10 1
116 79.82 humidity 70.0 30 > th dose dependent rect. 2 1
117 79.82 temperature 25.0 720 > th dose dependent rect. 24 11
121 79.84 humidity 50.0 30 > th dose dependent rect. 2 1
127 79.86 temperature 25.0 30 < th dose independent rect. 2 1
129 79.87 temperature 10.0 30 > th dose independent rect. 2 1
132 79.87 humidity 50.0 30 > th dose independent rect. 2 1
136 79.87 atmosphere 1010.0 30 < th dose independent rect. 2 1
138 79.87 radiation 1.0 30 < th dose independent rect. 2 1
143 79.87 precipitation 0.1 30 < th dose independent rect. 2 1
144 79.87 temperature 10.0 30 > th dose independent rect. 3 23
145 79.87 radiation 1.0 30 < th dose dependent rect. 2 1
150 79.87 precipitation 0.1 30 < th dose dependent rect. 2 1
152 79.88 atmosphere 1015.0 30 < th dose dependent rect. 2 1
153 79.89 temperature 30.0 30 < th dose dependent rect. 2 1
156 79.90 wind 1.0 30 > th dose independent rect. 2 1
158 79.90 wind 9.0 30 < th dose dependent rect. 2 1
159 79.90 temperature 10.0 10 > th dose dependent rect. 2 1
161 79.91 atmosphere 995.0 30 > th dose dependent rect. 2 1
178 79.99 temperature 25.0 270 > th dose dependent rect. 23 16
237 80.28 radiation 20.0 90 < th dose independent rect. 3 22
253 80.48 radiation 30.0 270 < th dose independent rect. 13 10
259 80.54 wind 9.0 10 < th dose independent rect. 14 14
264 80.58 humidity 70.0 4320 > th dose dependent rect. 3 1
286 80.77 humidity 60.0 30 > th dose dependent rect. 14 1
288 80.78 humidity 80.0 4320 > th dose independent rect. 22 7
298 80.84 atmosphere 1000.0 30 > th dose independent rect. 15 23
304 80.90 temperature 10.0 1440 > th dose independent rect. 15 1
309 80.90 temperature 10.0 1440 > th dose independent rect. 16 23
313 80.91 atmosphere 1005.0 30 > th dose independent rect. 14 1
315 80.92 temperature 20.0 30 > th dose independent rect. 14 1
316 80.92 humidity 60.0 30 > th dose independent rect. 14 1
317 80.92 radiation 30.0 30 > th dose independent rect. 14 1
320 80.93 wind 3.0 30 > th dose independent rect. 14 1
321 80.93 wind 7.0 30 < th dose independent rect. 14 1
330 80.95 radiation 30.0 30 > th dose dependent rect. 14 1
336 80.98 temperature 20.0 30 > th dose dependent rect. 14 1
340 80.99 temperature 25.0 10 > th dose independent rect. 15 18
341 80.99 humidity 80.0 4320 < th dose dependent rect. 22 1
342 81.00 temperature 30.0 10 < th dose independent rect. 4 10
345 81.00 temperature 10.0 30 > th dose dependent rect. 14 1
350 81.02 radiation 40.0 30 < th dose independent rect. 14 1
351 81.02 atmosphere 995.0 30 > th dose dependent rect. 14 1
355 81.03 precipitation 0.1 10 < th dose independent rect. 14 14
357 81.03 precipitation 0.1 10 < th dose dependent rect. 14 14
359 81.04 temperature 10.0 30 > th dose independent rect. 14 1
362 81.04 humidity 90.0 30 < th dose independent rect. 14 1
364 81.04 atmosphere 1010.0 30 < th dose independent rect. 14 1
366 81.04 radiation 1.0 30 > th dose independent rect. 14 1
367 81.04 precipitation 0.1 30 < th dose independent rect. 14 1
368 81.04 radiation 40.0 10 < th dose independent rect. 14 14
369 81.04 radiation 20.0 10 < th dose independent rect. 4 21
370 81.04 temperature 10.0 30 > th dose independent rect. 15 23
371 81.04 precipitation 0.1 30 < th dose dependent rect. 14 1
378 81.05 wind 1.0 30 > th dose dependent rect. 14 1
381 81.06 temperature 30.0 30 < th dose independent rect. 14 1
384 81.06 wind 9.0 30 < th dose dependent rect. 14 1
387 81.07 atmosphere 1015.0 30 < th dose dependent rect. 14 1
388 81.07 radiation 1.0 30 > th dose dependent rect. 14 1
391 81.09 humidity 70.0 30 < th dose independent rect. 14 1
433 81.17 humidity 50.0 10 > th dose independent rect. 4 10
436 81.18 precipitation 0.1 10 < th dose independent rect. 4 10
437 81.18 humidity 90.0 30 < th dose dependent rect. 14 1
440 81.18 precipitation 0.1 10 < th dose dependent rect. 4 10
444 81.20 temperature 10.0 10 > th dose independent rect. 4 10
446 81.20 atmosphere 995.0 10 > th dose independent rect. 4 10
447 81.20 atmosphere 1015.0 10 < th dose independent rect. 4 10
449 81.20 temperature 10.0 10 > th dose independent rect. 14 14
450 81.20 atmosphere 995.0 10 > th dose independent rect. 3 23
472 81.28 radiation 40.0 90 < th dose dependent rect. 15 10
473 81.28 temperature 25.0 10 > th dose dependent rect. 20 11
474 81.29 humidity 50.0 30 > th dose independent rect. 14 14
475 81.29 precipitation 0.1 30 < th dose independent rect. 15 23
477 81.29 precipitation 0.1 30 < th dose dependent rect. 15 23
479 81.30 atmosphere 995.0 10 > th dose independent rect. 14 14
482 81.31 temperature 25.0 90 > th dose dependent rect. 20 12
485 81.33 temperature 25.0 270 > th dose dependent sin 2 NA
493 81.35 atmosphere 995.0 90 > th dose dependent rect. 17 16
514 81.41 wind 1.0 90 > th dose independent rect. 15 10
528 81.45 temperature 10.0 1440 > th dose independent rect. 5 10
531 81.45 temperature 10.0 1440 > th dose independent rect. 15 14
561 81.48 temperature 10.0 720 > th dose dependent rect. 7 4
591 81.51 humidity 60.0 4320 > th dose dependent rect. 22 8
598 81.53 temperature 30.0 90 < th dose independent rect. 3 22
603 81.54 temperature 25.0 10 > th dose independent rect. 19 19
610 81.55 temperature 25.0 720 > th dose independent rect. 7 1
615 81.55 humidity 80.0 4320 > th dose independent rect. 18 13
620 81.57 temperature 25.0 720 > th dose independent rect. 7 4
634 81.59 temperature 30.0 10 < th dose independent rect. 15 23
646 81.62 wind 1.0 30 > th dose independent rect. 4 10
670 81.64 wind 9.0 10 < th dose independent rect. 4 10
676 81.66 humidity 80.0 14400 > th dose independent rect. 19 1
677 81.66 wind 9.0 270 < th dose independent rect. 23 16
691 81.67 temperature 10.0 10 > th dose dependent rect. 14 14
701 81.69 radiation 1.0 4320 < th dose dependent rect. 3 1
702 81.69 radiation 40.0 30 < th dose dependent rect. 14 1
710 81.71 wind 9.0 10 < th dose independent rect. 12 16
723 81.73 radiation 10.0 43200 < th dose dependent rect. 3 1
727 81.74 wind 9.0 1440 < th dose independent rect. 3 1
728 81.74 temperature 10.0 1440 > th dose independent rect. 3 1
731 81.74 temperature 30.0 1440 < th dose independent rect. 3 1
735 81.74 humidity 50.0 1440 > th dose independent rect. 3 1
744 81.74 atmosphere 995.0 1440 > th dose independent rect. 3 1
745 81.74 radiation 1.0 1440 < th dose independent rect. 3 1
766 81.74 temperature 10.0 1440 > th dose independent rect. 4 23
784 81.75 humidity 80.0 14400 < th dose independent rect. 19 1
799 81.75 humidity 60.0 30 > th dose independent rect. 12 16
817 81.78 wind 9.0 90 < th dose independent rect. 1 14
825 81.79 temperature 10.0 30 > th dose dependent rect. 12 16
845 81.83 wind 1.0 90 > th dose independent rect. 3 22
865 81.88 wind 1.0 270 > th dose independent rect. 15 8
867 81.88 precipitation 0.1 90 < th dose independent rect. 3 22
872 81.88 precipitation 0.1 90 < th dose dependent rect. 3 22
918 81.96 precipitation 0.1 90 < th dose independent rect. 1 14
921 81.96 precipitation 0.1 90 < th dose dependent rect. 1 14
923 81.97 precipitation 0.1 270 < th dose independent rect. 23 16
930 81.97 precipitation 0.1 270 < th dose dependent rect. 23 16
954 82.01 temperature 10.0 90 > th dose independent rect. 15 10
955 82.01 temperature 10.0 90 > th dose independent rect. 1 14
956 82.01 atmosphere 1015.0 90 < th dose independent rect. 1 14
969 82.04 humidity 70.0 30 > th dose independent rect. 4 21
973 82.05 atmosphere 995.0 90 > th dose independent rect. 1 14
977 82.06 temperature 10.0 270 > th dose independent rect. 15 8
978 82.06 temperature 10.0 270 > th dose independent rect. 23 16
979 82.06 atmosphere 995.0 270 > th dose independent rect. 23 16
985 82.07 humidity 80.0 4320 < th dose independent rect. 17 14
986 82.07 humidity 60.0 270 > th dose independent rect. 12 15
987 82.07 radiation 20.0 10 < th dose independent rect. 6 19
996 82.09 temperature 30.0 14400 > th dose independent rect. 17 1