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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0378500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.12 (0.0508) R2 : 0.242
β1 : -1.13 (0.186) R2dD : 0.0633 R2D : 0.0773
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.22 (0.123) R2dE : 0.168 R2E : 0.18
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.131 (0.109) R2dN8 : 0.00323 R2N8 : -0.0088
σ : 0.949
deviance : 415.01
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 79
memory length : 28
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.54 0.938 4.13 -1.09 0.563 -1.39 0.918 -1.74 -0.0844 23 71.3 10 -- --
403.3 0.943 4.13 -1.14 0.489 -1.31 -0.0187 -- -0.124 21.5 77.14 14 -- --
399.23 0.938 4.13 -1.14 0.546 -1.31 -- -1.18 -0.0793 22 71.3 10 -- --
403.27 0.941 4.13 -1.14 0.491 -1.31 -- -- -0.123 21.6 77 12 -- --
411.76 0.945 4.12 -1.09 -- -1.17 -- -0.976 -0.108 -- 77.67 17 -- --
449.27 0.994 4.09 -1.21 1 -- 0.45 -- 0.0492 16.4 -- -- -- --
449.81 0.993 4.09 -1.21 1.01 -- -- -- 0.0516 16.5 -- -- -- --
415.01 0.949 4.12 -1.13 -- -1.22 -- -- -0.131 -- 79 28 -- --
436.35 0.978 4.11 -- 0.47 -1.36 -- -- -0.0288 21.5 79 13 -- --
504.17 1.05 4.09 -1.25 -- -- -- -- 0.025 -- -- -- -- --
488.29 1.03 4.06 -- 1.03 -- -- -- 0.186 16.5 -- -- -- --
448.2 0.986 4.09 -- -- -1.27 -- -- -0.0123 -- 79 29 -- --
545.23 1.09 4.05 -- -- -- -- -- 0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 387.52 humidity 90 10 < th dose dependent sin 11 NA
2 388.82 humidity 50 10 > th dose dependent sin 11 NA
9 390.93 humidity 90 10 < th dose dependent rect. 17 17
12 391.82 humidity 80 30 < th dose independent rect. 17 17
16 392.51 humidity 80 90 < th dose independent rect. 14 20
19 392.70 humidity 90 10 < th dose dependent rect. 14 20
24 393.27 humidity 90 270 < th dose dependent rect. 13 21
41 394.88 humidity 50 270 > th dose dependent rect. 7 23
51 395.34 humidity 70 10 > th dose dependent rect. 16 22
64 396.07 humidity 70 10 > th dose dependent rect. 19 23
70 396.55 humidity 80 90 < th dose independent sin 12 NA
127 398.75 humidity 70 10 > th dose dependent rect. 11 23
132 398.85 humidity 70 10 > th dose dependent no NA NA
136 398.94 humidity 70 10 > th dose dependent rect. 13 23
138 399.06 humidity 70 10 > th dose dependent rect. 9 23
144 399.22 humidity 80 90 > th dose independent rect. 16 14
147 399.30 humidity 70 10 > th dose dependent rect. 7 23
161 399.46 humidity 80 90 > th dose independent sin 12 NA
241 401.44 humidity 80 30 > th dose independent rect. 7 23
267 401.70 humidity 80 10 > th dose dependent rect. 3 23
279 401.87 humidity 50 270 > th dose dependent rect. 16 23
299 402.09 humidity 80 90 > th dose independent rect. 12 18
320 402.49 humidity 80 10 < th dose independent rect. 17 13
331 402.67 humidity 70 10 > th dose dependent rect. 19 19
344 402.92 humidity 90 10 < th dose dependent rect. 17 15
347 402.93 humidity 70 10 > th dose dependent rect. 21 23
367 403.23 humidity 80 90 > th dose independent rect. 16 17
389 403.55 temperature 30 270 < th dose independent rect. 10 11
403 403.75 humidity 90 720 < th dose dependent rect. 22 18
406 403.79 humidity 70 10 > th dose dependent rect. 19 17
410 403.83 temperature 30 270 > th dose independent rect. 14 3
426 403.91 humidity 80 10 > th dose dependent rect. 1 23
427 403.92 temperature 30 270 > th dose independent rect. 15 1
429 403.94 humidity 80 30 > th dose independent rect. 16 22
461 404.17 humidity 50 270 > th dose dependent no NA NA
476 404.35 humidity 80 10 < th dose independent rect. 17 23
586 405.34 humidity 90 10 < th dose independent rect. 1 19
612 405.54 humidity 60 720 > th dose independent rect. 10 4
632 405.72 humidity 80 10 > th dose dependent rect. 23 23
642 405.79 temperature 30 270 < th dose independent sin 17 NA
663 405.96 humidity 80 90 > th dose independent rect. 12 21
678 406.09 humidity 90 10 < th dose dependent rect. 12 22
699 406.20 humidity 80 30 < th dose independent rect. 21 23
708 406.24 humidity 70 10 > th dose dependent rect. 19 15
742 406.39 humidity 80 30 > th dose independent no NA NA
757 406.46 humidity 80 30 < th dose independent no NA NA
773 406.47 humidity 80 30 < th dose independent rect. 1 23
774 406.47 humidity 80 30 < th dose independent rect. 7 23
783 406.51 humidity 80 30 < th dose independent rect. 23 23
791 406.56 humidity 80 30 < th dose independent rect. 5 23
792 406.57 humidity 80 30 > th dose independent rect. 19 23
794 406.59 humidity 80 30 < th dose independent rect. 3 23
838 406.93 humidity 90 10 < th dose independent rect. 1 21
839 406.93 humidity 50 720 > th dose dependent rect. 1 14
863 407.08 temperature 30 270 < th dose independent rect. 8 22
904 407.30 humidity 50 720 > th dose dependent rect. 11 2
946 407.47 humidity 60 270 > th dose dependent rect. 16 13
986 407.64 humidity 50 720 > th dose dependent rect. 10 4