BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0507200 Os12g0507200|AK099039
(160 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0507200 Similar to Eukaryotic translation initiation f... 332 8e-92
Os07g0597000 Similar to Eukaryotic translation initiation f... 320 4e-88
Os03g0758800 Similar to Eukaryotic translation initiation f... 310 2e-85
Os07g0112800 Similar to Eukaryotic translation initiation f... 301 2e-82
D10399 194 2e-50
AK110635 190 4e-49
Os07g0236250 Similar to Eukaryotic translation initiation f... 108 1e-24
Os07g0236100 74 4e-14
>Os12g0507200 Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)
(eIF-4D)
Length = 160
Score = 332 bits (851), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPT 120
FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPT
Sbjct: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPT 120
Query: 121 DDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
DDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPK
Sbjct: 121 DDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
>Os07g0597000 Similar to Eukaryotic translation initiation factor 5A (eIF-5A)
Length = 160
Score = 320 bits (819), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 154/160 (96%), Positives = 156/160 (97%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPT 120
FVAIDIF KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTE+GNTKDDLRLPT
Sbjct: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
Query: 121 DDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
DD+LL QIK GFGEGKDLVVTVMSAMGEEQICALKDIGPK
Sbjct: 121 DDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
>Os03g0758800 Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)
(eIF-4D)
Length = 161
Score = 310 bits (795), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 148/160 (92%), Positives = 155/160 (96%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPT 120
FVAIDIF KKLEDIVPSSHNCDVPHVNRT+YQLIDISEDGFVSLLTE+G TKDDLRLP+
Sbjct: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPS 120
Query: 121 DDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
D+ LL+QIKDGF EGKDL+VTVMSAMGEEQICALKDIGPK
Sbjct: 121 DEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALKDIGPK 160
>Os07g0112800 Similar to Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)
Length = 162
Score = 301 bits (770), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/161 (89%), Positives = 154/161 (95%), Gaps = 1/161 (0%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPT 120
FV IDIF KKLEDIVPSSHNCDVPHV+RT+YQLIDISEDGFVSLLTE+GNTKDDLRLPT
Sbjct: 61 FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
Query: 121 DDNLLSQIKDGFG-EGKDLVVTVMSAMGEEQICALKDIGPK 160
DD L +QIK+GFG EGKD+++TVMSAMGEEQICA+K+IG K
Sbjct: 121 DDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAK 161
>D10399
Length = 95
Score = 194 bits (493), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEY 92
FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEY
Sbjct: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEY 92
>AK110635
Length = 162
Score = 190 bits (482), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 126/157 (80%), Gaps = 5/157 (3%)
Query: 2 SDSEEHH--FESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKC 59
SD E+H+ FES ADAG+S T+P Q +RKNG++VIK RPCK++++STSKTGKHGHAK
Sbjct: 4 SDDEQHNATFES-ADAGSSLTFPMQCSALRKNGHVVIKGRPCKIIDMSTSKTGKHGHAKV 62
Query: 60 HFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLP 119
H VA DIFT+KK EDI PS+HN DVP+V+R E+QL++I +DG+++L+T +G+TKDD+R+P
Sbjct: 63 HLVATDIFTSKKYEDISPSTHNMDVPNVSRNEFQLVNI-DDGYLNLMTNDGDTKDDVRVP 121
Query: 120 TDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALKD 156
D L QI+ F +GKDL+VT++SAMGEE + KD
Sbjct: 122 -DGELGEQIQAAFDDGKDLMVTIVSAMGEEHCLSFKD 157
>Os07g0236250 Similar to Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)
Length = 175
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/66 (81%), Positives = 58/66 (87%), Gaps = 1/66 (1%)
Query: 86 HVNRTEYQLIDISEDG-FVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMS 144
H+NRT YQLIDISEDG FVSLLTE+GNTKDDL LPT DNLL QIK GFGEGKD+VVTVMS
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 145 AMGEEQ 150
AMG +
Sbjct: 106 AMGRSR 111
>Os07g0236100
Length = 181
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 64/111 (57%), Gaps = 19/111 (17%)
Query: 58 KCHFVAIDIFTAKKLEDI--VPSS---HNCDVP-HVNRTEYQLIDISEDG-FVSLLTENG 110
KC F + I T L + +P H V H+NRT YQLIDISEDG FVSLLTE+G
Sbjct: 82 KCPFRKVVILTTTVLPSVTLLPRILFIHPTTVMFHMNRTNYQLIDISEDGLFVSLLTESG 141
Query: 111 NTKDDLRLPTDDNLLSQIKDGFGEGK-DLVVTVMSAMGEEQICALKDIGPK 160
NTKDDL LPT+ +G + DLV A EE+I ALKDIG K
Sbjct: 142 NTKDDLGLPTETI-------SWGRSRLDLV----KARKEEEIYALKDIGTK 181
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,439,292
Number of extensions: 213358
Number of successful extensions: 349
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 8
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)