Os07g0112800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Eukaryotic translation initiation factor 5A-4 (eIF-5A-4).
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Os07g0112800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Eukaryotic translation initiation factor 5A-4 (eIF-5A-4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.21 | 0.385 | 10.2 | -1.02 | 0.522 | 1.73 | -0.363 | -3.57 | -0.46 | 22.6 | 24.95 | 101 | -- | -- |
| 71.24 | 0.393 | 10.1 | -0.604 | 0.517 | 1.39 | -0.187 | -- | -0.425 | 22 | 23.2 | 120 | -- | -- |
| 67.69 | 0.383 | 10.1 | -0.974 | 0.516 | 1.69 | -- | -3.34 | -0.444 | 22.4 | 25 | 105 | -- | -- |
| 71.27 | 0.393 | 10.1 | -0.606 | 0.489 | 1.38 | -- | -- | -0.419 | 22.1 | 23.19 | 130 | -- | -- |
| 72.99 | 0.398 | 10.2 | -1.17 | -- | 1.61 | -- | -2.76 | -0.604 | -- | 22.27 | 437 | -- | -- |
| 102.57 | 0.475 | 10.1 | -0.33 | 0.738 | -- | 0.402 | -- | -0.226 | 18.6 | -- | -- | -- | -- |
| 102.97 | 0.475 | 10.1 | -0.336 | 0.739 | -- | -- | -- | -0.225 | 18.6 | -- | -- | -- | -- |
| 77.35 | 0.41 | 10.1 | -0.628 | -- | 1.38 | -- | -- | -0.437 | -- | 22.78 | 404 | -- | -- |
| 80.24 | 0.417 | 10.1 | -- | 0.491 | 1.21 | -- | -- | -0.324 | 21.6 | 23.72 | 122 | -- | -- |
| 131.44 | 0.536 | 10.1 | -0.354 | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
| 105.95 | 0.481 | 10.1 | -- | 0.743 | -- | -- | -- | -0.188 | 18.6 | -- | -- | -- | -- |
| 87.13 | 0.435 | 10.1 | -- | -- | 1.27 | -- | -- | -0.333 | -- | 23.46 | 378 | -- | -- |
| 134.74 | 0.542 | 10.1 | -- | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.34 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 2 | 60.68 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 40 | 62.51 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 65 | 63.20 | temperature | 30.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 68 | 63.25 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 201 | 65.59 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 15 |
| 222 | 65.91 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 223 | 65.91 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 224 | 65.92 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 227 | 65.92 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 229 | 65.93 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 242 | 66.06 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 306 | 66.72 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 21 |
| 307 | 66.72 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 317 | 66.78 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 346 | 66.87 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 349 | 66.90 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 374 | 67.08 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 382 | 67.20 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 398 | 67.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 399 | 67.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 9 |
| 401 | 67.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 11 |
| 402 | 67.30 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 418 | 67.31 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 442 | 67.40 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 443 | 67.41 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 458 | 67.45 | radiation | 1.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 501 | 67.55 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 507 | 67.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 522 | 67.56 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 543 | 67.61 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 549 | 67.62 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 628 | 67.77 | temperature | 30.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 672 | 68.01 | radiation | 1.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 686 | 68.03 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 712 | 68.11 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 714 | 68.12 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 750 | 68.15 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 751 | 68.15 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 774 | 68.19 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 790 | 68.21 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 823 | 68.24 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 824 | 68.24 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 849 | 68.29 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 863 | 68.30 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 879 | 68.32 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 15 |
| 883 | 68.32 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 19 |
| 884 | 68.32 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 21 |
| 897 | 68.33 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 908 | 68.34 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 916 | 68.34 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 18 |
| 921 | 68.35 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 10 |
| 958 | 68.37 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 962 | 68.38 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |