BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0112800 Os07g0112800|AK058206
         (162 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13950.1  | chr1:4773631-4774668 FORWARD LENGTH=159            246   4e-66
AT1G69410.1  | chr1:26089301-26090194 FORWARD LENGTH=159          241   2e-64
AT1G26630.1  | chr1:9205968-9207098 FORWARD LENGTH=160            229   4e-61

>AT1G13950.1 | chr1:4773631-4774668 FORWARD LENGTH=159
          Length = 158

 Score =  246 bits (627), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/161 (76%), Positives = 138/161 (85%), Gaps = 3/161 (1%)

Query: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
           MSD EEHHFES +DAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1   MSD-EEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 58

Query: 61  FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNXXXXXXXXX 120
           FV IDIF  KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDG+VSLLT++G+         
Sbjct: 59  FVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPN 118

Query: 121 XXXXXNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAK 161
                 QIK+GF ++GKD++++VMSAMGEEQI A+K+IG K
Sbjct: 119 DDTLLQQIKSGF-DDGKDLVVSVMSAMGEEQINALKDIGPK 158



>AT1G69410.1 | chr1:26089301-26090194 FORWARD LENGTH=159
          Length = 158

 Score =  241 bits (614), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/161 (74%), Positives = 135/161 (83%), Gaps = 3/161 (1%)

Query: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
           MSD +EHHFES +DAGASKTYPQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1   MSD-DEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCH 58

Query: 61  FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNXXXXXXXXX 120
           FV IDIF  KKLEDIVPSSHNCDVPHV+R DYQLIDISEDGFVSLLT++G+         
Sbjct: 59  FVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPT 118

Query: 121 XXXXXNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAK 161
                 Q+KNGF EEGKD++++VMSAMGEEQ+CA+KE+G K
Sbjct: 119 DEALLTQLKNGF-EEGKDIVVSVMSAMGEEQMCALKEVGPK 158



>AT1G26630.1 | chr1:9205968-9207098 FORWARD LENGTH=160
          Length = 159

 Score =  229 bits (585), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 132/160 (82%), Gaps = 3/160 (1%)

Query: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
           MSD +EHHFE+ +++GASKTYPQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1   MSD-DEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCH 58

Query: 61  FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNXXXXXXXXX 120
           FV IDIF  KKLEDIVPSSHNCDVPHV+R DYQLIDI+EDGFVSLLT+SG          
Sbjct: 59  FVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPT 118

Query: 121 XXXXXNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGA 160
                 Q++ GF +EGKD++++VMS+MGEEQICAVKE+G 
Sbjct: 119 DDGLTAQMRLGF-DEGKDIVVSVMSSMGEEQICAVKEVGG 157



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,287,842
Number of extensions: 122042
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 71
Effective length of database: 8,611,713
Effective search space: 611431623
Effective search space used: 611431623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)