BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0112800 Os07g0112800|AK058206
         (162 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0112800  Similar to Eukaryotic translation initiation f...   302   6e-83
Os07g0597000  Similar to Eukaryotic translation initiation f...   275   7e-75
Os03g0758800  Similar to Eukaryotic translation initiation f...   274   2e-74
Os12g0507200  Similar to Eukaryotic translation initiation f...   271   2e-73
D10399                                                            186   5e-48
AK110635                                                          155   2e-38
Os07g0236250  Similar to Eukaryotic translation initiation f...    74   4e-14

>Os07g0112800 Similar to Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)
          Length = 162

 Score =  302 bits (774), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 148/162 (91%), Positives = 148/162 (91%)

Query: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
           MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60

Query: 61  FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNXXXXXXXXX 120
           FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGN         
Sbjct: 61  FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT 120

Query: 121 XXXXXNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAKN 162
                NQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAKN
Sbjct: 121 DDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAKN 162



>Os07g0597000 Similar to Eukaryotic translation initiation factor 5A (eIF-5A)
          Length = 160

 Score =  275 bits (704), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 135/161 (83%), Positives = 142/161 (88%), Gaps = 1/161 (0%)

Query: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
           MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60

Query: 61  FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNXXXXXXXXX 120
           FV IDIFNGKKLEDIVPSSHNCDVPHV+RT+YQLIDISEDGFVSLLTESGN         
Sbjct: 61  FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPT 120

Query: 121 XXXXXNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAK 161
                 QIK GFG EGKD+++TVMSAMGEEQICA+K+IG K
Sbjct: 121 DDSLLGQIKTGFG-EGKDLVVTVMSAMGEEQICALKDIGPK 160



>Os03g0758800 Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)
           (eIF-4D)
          Length = 161

 Score =  274 bits (701), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/162 (83%), Positives = 142/162 (87%), Gaps = 1/162 (0%)

Query: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
           MSDSEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCH 60

Query: 61  FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNXXXXXXXXX 120
           FV IDIFNGKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGFVSLLTESG          
Sbjct: 61  FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPS 120

Query: 121 XXXXXNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAKN 162
                 QIK+GF  EGKD+I+TVMSAMGEEQICA+K+IG KN
Sbjct: 121 DEALLTQIKDGFA-EGKDLIVTVMSAMGEEQICALKDIGPKN 161



>Os12g0507200 Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)
           (eIF-4D)
          Length = 160

 Score =  271 bits (693), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 142/161 (88%), Gaps = 1/161 (0%)

Query: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
           MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60

Query: 61  FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNXXXXXXXXX 120
           FV IDIF  KKLEDIVPSSHNCDVPHV+RT+YQLIDISEDGFVSLLTE+GN         
Sbjct: 61  FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPT 120

Query: 121 XXXXXNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAK 161
                +QIK+GFG EGKD+++TVMSAMGEEQICA+K+IG K
Sbjct: 121 DDNLLSQIKDGFG-EGKDLVVTVMSAMGEEQICALKDIGPK 160



>D10399 
          Length = 95

 Score =  186 bits (473), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 89/92 (96%)

Query: 1  MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
          MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1  MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60

Query: 61 FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDY 92
          FV IDIF  KKLEDIVPSSHNCDVPHV+RT+Y
Sbjct: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEY 92



>AK110635 
          Length = 162

 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 112/158 (70%), Gaps = 6/158 (3%)

Query: 2   SDSEEHH--FESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKC 59
           SD E+H+  FES ADAG+S T+P Q   +RKNG++VIK RPCK++++STSKTGKHGHAK 
Sbjct: 4   SDDEQHNATFES-ADAGSSLTFPMQCSALRKNGHVVIKGRPCKIIDMSTSKTGKHGHAKV 62

Query: 60  HFVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNXXXXXXXX 119
           H V  DIF  KK EDI PS+HN DVP+V R ++QL++I +DG+++L+T  G+        
Sbjct: 63  HLVATDIFTSKKYEDISPSTHNMDVPNVSRNEFQLVNI-DDGYLNLMTNDGD-TKDDVRV 120

Query: 120 XXXXXXNQIKNGFGEEGKDMILTVMSAMGEEQICAVKE 157
                  QI+  F ++GKD+++T++SAMGEE   + K+
Sbjct: 121 PDGELGEQIQAAF-DDGKDLMVTIVSAMGEEHCLSFKD 157



>Os07g0236250 Similar to Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)
          Length = 175

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 47/67 (70%), Gaps = 2/67 (2%)

Query: 86  HVDRTDYQLIDISEDG-FVSLLTESGNXXXXXXXXXXXXXXNQIKNGFGEEGKDMILTVM 144
           H++RT+YQLIDISEDG FVSLLTESGN               QIK GFG EGKD+++TVM
Sbjct: 46  HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFG-EGKDVVVTVM 104

Query: 145 SAMGEEQ 151
           SAMG  +
Sbjct: 105 SAMGRSR 111



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,805,877
Number of extensions: 167235
Number of successful extensions: 233
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 7
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)