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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0507200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (eIF-4D).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0159) R2 : 0.884
β1 : 0.842 (0.0583) R2dD : 0.0549 R2D : 0.0405
β2 : 2.39 (0.0415) R2dC : 0.845 R2C : 0.829
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.153 (0.034) R2dN8 : 0.00689 R2N8 : -0.00754
σ : 0.299
deviance : 40.85
__
_____
C
peak time of C : 17.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.28 0.259 11.9 0.684 0.223 -2.67 -2.11 -1.87 0.0686 17.7 1.247 714 -- --
29.62 0.253 11.9 0.659 0.77 -2.22 -0.383 -- 0.0767 16.4 1.875 771 -- --
30.14 0.256 11.9 0.544 0.496 -2.47 -- 0.837 0.0276 16.1 1.79 748 -- --
29.9 0.255 11.9 0.67 0.676 -2.43 -- -- 0.0635 15.8 2.09 784 -- --
31.89 0.263 11.9 0.614 -- -2.92 -- 0.625 0.0317 -- 1.682 713 -- --
40.53 0.298 11.9 0.84 2.39 -- -0.36 -- 0.155 17.6 -- -- -- --
40.85 0.299 11.9 0.842 2.39 -- -- -- 0.153 17.6 -- -- -- --
32.42 0.265 11.9 0.616 -- -2.93 -- -- 0.0316 -- 1.46 716 -- --
40.57 0.297 11.9 -- 0.403 -2.79 -- -- -0.0415 14.5 0.9687 773 -- --
337.89 0.859 11.9 0.764 -- -- -- -- 0.0952 -- -- -- -- --
59.51 0.361 12 -- 2.38 -- -- -- 0.0593 17.6 -- -- -- --
41.83 0.301 11.9 -- -- -2.96 -- -- -0.0308 -- 0.6 718 -- --
353.28 0.877 11.9 -- -- -- -- -- 0.0105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.43 temperature 10.0 90 > th dose dependent rect. 8 20
3 23.89 temperature 10.0 10 > th dose dependent rect. 9 20
5 24.07 humidity 50.0 270 > th dose dependent rect. 17 14
7 24.20 radiation 1.0 720 < th dose dependent rect. 16 7
19 24.69 radiation 1.0 720 < th dose independent rect. 15 8
24 25.06 precipitation 0.1 270 < th dose independent rect. 5 23
25 25.06 precipitation 0.1 270 < th dose dependent rect. 5 23
36 25.42 radiation 1.0 720 > th dose independent rect. 16 2
40 25.54 radiation 1.0 720 > th dose independent rect. 15 4
50 25.54 radiation 1.0 270 < th dose independent rect. 3 15
78 26.07 radiation 1.0 270 < th dose dependent rect. 3 16
79 26.15 precipitation 0.1 90 < th dose independent rect. 8 20
80 26.15 precipitation 0.1 90 < th dose dependent rect. 8 20
93 26.39 radiation 20.0 270 < th dose dependent rect. 15 16
94 26.41 radiation 1.0 270 > th dose independent rect. 7 12
107 26.43 radiation 1.0 720 < th dose dependent rect. 4 19
117 26.58 humidity 80.0 270 > th dose independent rect. 3 3
118 26.59 radiation 10.0 270 < th dose independent rect. 3 3
121 26.64 radiation 10.0 270 < th dose dependent rect. 3 3
132 26.76 wind 9.0 270 < th dose independent rect. 3 3
133 26.76 temperature 10.0 270 > th dose independent rect. 3 3
135 26.76 temperature 30.0 270 < th dose independent rect. 3 3
136 26.76 humidity 50.0 270 > th dose independent rect. 3 3
139 26.76 atmosphere 995.0 270 > th dose independent rect. 3 3
140 26.76 atmosphere 1015.0 270 < th dose independent rect. 3 3
144 26.76 temperature 10.0 270 > th dose independent rect. 6 21
145 26.80 radiation 1.0 720 > th dose independent rect. 15 20
146 26.80 humidity 50.0 270 > th dose dependent rect. 3 3
154 26.89 temperature 10.0 1440 > th dose independent rect. 5 5
157 26.89 atmosphere 995.0 1440 > th dose independent rect. 5 5
158 26.89 atmosphere 1015.0 1440 < th dose independent rect. 5 5
159 26.89 temperature 10.0 1440 > th dose independent rect. 10 19
174 27.01 humidity 50.0 90 > th dose dependent rect. 5 3
178 27.04 precipitation 0.1 270 < th dose independent rect. 3 3
179 27.04 precipitation 0.1 270 < th dose dependent rect. 3 3
198 27.09 humidity 50.0 4320 > th dose independent rect. 5 5
200 27.11 temperature 10.0 90 > th dose dependent rect. 4 4
211 27.17 wind 9.0 270 < th dose independent rect. 6 21
227 27.21 temperature 10.0 90 > th dose independent rect. 8 20
237 27.26 radiation 1.0 720 < th dose independent rect. 10 13
243 27.31 radiation 1.0 720 < th dose dependent rect. 10 13
249 27.36 wind 9.0 90 < th dose independent rect. 8 20
297 27.45 atmosphere 995.0 90 > th dose independent rect. 8 20
306 27.48 radiation 1.0 720 < th dose dependent sin 14 NA
313 27.51 wind 1.0 90 > th dose independent rect. 4 4
347 27.67 atmosphere 995.0 270 > th dose independent rect. 6 21
366 27.70 wind 1.0 90 > th dose independent rect. 8 20
386 27.73 wind 9.0 10 < th dose independent rect. 9 20
395 27.79 radiation 1.0 720 > th dose independent sin 14 NA
398 27.81 radiation 1.0 720 < th dose independent sin 14 NA
402 27.82 wind 9.0 90 < th dose dependent rect. 5 3
440 27.96 wind 9.0 1440 < th dose independent rect. 5 4
476 28.05 precipitation 0.1 270 < th dose independent rect. 22 13
477 28.05 temperature 10.0 10 > th dose dependent rect. 5 4
479 28.05 precipitation 0.1 270 < th dose dependent rect. 22 13
485 28.09 wind 1.0 270 > th dose independent rect. 4 1
493 28.10 radiation 1.0 270 < th dose independent sin 1 NA
498 28.13 temperature 30.0 270 < th dose independent rect. 17 14
499 28.13 atmosphere 995.0 90 > th dose dependent rect. 4 4
501 28.14 radiation 1.0 270 > th dose independent sin 1 NA
525 28.17 wind 1.0 270 > th dose independent rect. 6 21
530 28.18 radiation 1.0 270 < th dose independent rect. 3 6
603 28.28 radiation 1.0 270 < th dose dependent sin 1 NA
611 28.30 humidity 60.0 270 > th dose independent rect. 17 14
620 28.32 humidity 90.0 90 < th dose independent rect. 8 21
679 28.45 humidity 70.0 270 > th dose independent rect. 15 16
715 28.51 humidity 80.0 90 > th dose dependent rect. 5 18
828 28.74 wind 9.0 270 < th dose independent rect. 22 13
829 28.74 radiation 1.0 720 < th dose independent rect. 15 16
843 28.76 humidity 80.0 270 > th dose dependent rect. 2 20
856 28.80 temperature 10.0 270 > th dose independent rect. 11 11
857 28.80 temperature 10.0 270 > th dose independent rect. 22 13
858 28.80 atmosphere 995.0 270 > th dose independent rect. 22 13
870 28.82 humidity 50.0 270 > th dose independent rect. 22 13
938 28.96 atmosphere 1015.0 90 < th dose dependent rect. 5 2