BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0479900 Os12g0479900|AK120970
(510 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0479900 Conserved hypothetical protein 1007 0.0
Os11g0528400 Conserved hypothetical protein 839 0.0
Os01g0929000 Conserved hypothetical protein 735 0.0
Os06g0104000 Conserved hypothetical protein 92 1e-18
>Os12g0479900 Conserved hypothetical protein
Length = 510
Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/492 (100%), Positives = 492/492 (100%)
Query: 19 VMRDARKDGVVREVIRMEREAVIPVLKPKLVMKLAYLIEHDLDRSEFLKLCKKIEYTIRA 78
VMRDARKDGVVREVIRMEREAVIPVLKPKLVMKLAYLIEHDLDRSEFLKLCKKIEYTIRA
Sbjct: 19 VMRDARKDGVVREVIRMEREAVIPVLKPKLVMKLAYLIEHDLDRSEFLKLCKKIEYTIRA 78
Query: 79 WYLLQFEDLMQLYSLFDPVSGEKRLEQQNLTPEEIETLEFNFMTYLFQVMEKSNFKLLSD 138
WYLLQFEDLMQLYSLFDPVSGEKRLEQQNLTPEEIETLEFNFMTYLFQVMEKSNFKLLSD
Sbjct: 79 WYLLQFEDLMQLYSLFDPVSGEKRLEQQNLTPEEIETLEFNFMTYLFQVMEKSNFKLLSD 138
Query: 139 EEYDVAQSGKYLLNLPIKVDEPKLDSKLLSTYFKEHPHDNLPSFANKYIIFRRGIGIDRT 198
EEYDVAQSGKYLLNLPIKVDEPKLDSKLLSTYFKEHPHDNLPSFANKYIIFRRGIGIDRT
Sbjct: 139 EEYDVAQSGKYLLNLPIKVDEPKLDSKLLSTYFKEHPHDNLPSFANKYIIFRRGIGIDRT 198
Query: 199 TDYFIMEKLDVIISRAWSSLLRVTRIDRLFSKKPQVKSKKDTKKTDEINEDLEEPELFVE 258
TDYFIMEKLDVIISRAWSSLLRVTRIDRLFSKKPQVKSKKDTKKTDEINEDLEEPELFVE
Sbjct: 199 TDYFIMEKLDVIISRAWSSLLRVTRIDRLFSKKPQVKSKKDTKKTDEINEDLEEPELFVE 258
Query: 259 RIRLEKIELSVRNLMSKMTIQEPTFDRMIVVYRRAGTKTKPDRGIFVKHFKNIPMADMEI 318
RIRLEKIELSVRNLMSKMTIQEPTFDRMIVVYRRAGTKTKPDRGIFVKHFKNIPMADMEI
Sbjct: 259 RIRLEKIELSVRNLMSKMTIQEPTFDRMIVVYRRAGTKTKPDRGIFVKHFKNIPMADMEI 318
Query: 319 VLPEKKNPTLTPMDWVKFLISAVIGLVTLFGSLEMPKADIWVVIAILSGVIGYCAKIYFT 378
VLPEKKNPTLTPMDWVKFLISAVIGLVTLFGSLEMPKADIWVVIAILSGVIGYCAKIYFT
Sbjct: 319 VLPEKKNPTLTPMDWVKFLISAVIGLVTLFGSLEMPKADIWVVIAILSGVIGYCAKIYFT 378
Query: 379 FQQNMTIYQNLITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISYYILMEQGKATEQD 438
FQQNMTIYQNLITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISYYILMEQGKATEQD
Sbjct: 379 FQQNMTIYQNLITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISYYILMEQGKATEQD 438
Query: 439 LDLRCEELIKEEFGAECNFDVRDAVKKLERLGIVHRDSIGRIVCVSLKRANEILGNTTEE 498
LDLRCEELIKEEFGAECNFDVRDAVKKLERLGIVHRDSIGRIVCVSLKRANEILGNTTEE
Sbjct: 439 LDLRCEELIKEEFGAECNFDVRDAVKKLERLGIVHRDSIGRIVCVSLKRANEILGNTTEE 498
Query: 499 LVMRAQQSPTAS 510
LVMRAQQSPTAS
Sbjct: 499 LVMRAQQSPTAS 510
>Os11g0528400 Conserved hypothetical protein
Length = 503
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/487 (82%), Positives = 453/487 (93%)
Query: 24 RKDGVVREVIRMEREAVIPVLKPKLVMKLAYLIEHDLDRSEFLKLCKKIEYTIRAWYLLQ 83
+KDGVV+EVIR+ERE+VIP+LKPKL+MKLAYL+E D DR EFLKLC+++EYTIRAWYLLQ
Sbjct: 17 KKDGVVKEVIRLERESVIPILKPKLIMKLAYLVEQDKDRGEFLKLCRRVEYTIRAWYLLQ 76
Query: 84 FEDLMQLYSLFDPVSGEKRLEQQNLTPEEIETLEFNFMTYLFQVMEKSNFKLLSDEEYDV 143
FEDLMQLY+LFDPV+G K LEQQ+LTP+EIETLE NF+TY+FQ+MEKSNFKLLSDEEYDV
Sbjct: 77 FEDLMQLYALFDPVNGVKSLEQQSLTPDEIETLELNFLTYMFQIMEKSNFKLLSDEEYDV 136
Query: 144 AQSGKYLLNLPIKVDEPKLDSKLLSTYFKEHPHDNLPSFANKYIIFRRGIGIDRTTDYFI 203
AQSG+YLLNLPIKVDE K+D KLL+ YFK HPHDNLP+ +KYIIFRRGIGIDRTTDYF
Sbjct: 137 AQSGQYLLNLPIKVDESKVDKKLLTRYFKAHPHDNLPASVDKYIIFRRGIGIDRTTDYFF 196
Query: 204 MEKLDVIISRAWSSLLRVTRIDRLFSKKPQVKSKKDTKKTDEINEDLEEPELFVERIRLE 263
MEK+DVIISR W SLLRVT+IDRLFSKK Q+++KKD KKTDE+NE++EE E VERIRLE
Sbjct: 197 MEKVDVIISRVWRSLLRVTKIDRLFSKKKQLRAKKDPKKTDEVNEEVEEQEFSVERIRLE 256
Query: 264 KIELSVRNLMSKMTIQEPTFDRMIVVYRRAGTKTKPDRGIFVKHFKNIPMADMEIVLPEK 323
K+ELS++NL+S+MTIQEPTF+RMIVVYR++ T+ KPDRGIFVKHFKNIPMADME+VLPEK
Sbjct: 257 KMELSIKNLLSQMTIQEPTFERMIVVYRKSSTEAKPDRGIFVKHFKNIPMADMELVLPEK 316
Query: 324 KNPTLTPMDWVKFLISAVIGLVTLFGSLEMPKADIWVVIAILSGVIGYCAKIYFTFQQNM 383
KNP+LTPMDWVKFLISAV+GLVTL GSLEMPKADIWVVIAILSG+IGYCAKIYFTFQ NM
Sbjct: 317 KNPSLTPMDWVKFLISAVLGLVTLIGSLEMPKADIWVVIAILSGLIGYCAKIYFTFQANM 376
Query: 384 TIYQNLITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISYYILMEQGKATEQDLDLRC 443
YQNLITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVI+SYYILMEQGKAT QDLDLRC
Sbjct: 377 VSYQNLITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIVSYYILMEQGKATVQDLDLRC 436
Query: 444 EELIKEEFGAECNFDVRDAVKKLERLGIVHRDSIGRIVCVSLKRANEILGNTTEELVMRA 503
E+LIKEEFG ECNFDV DAVKKLE+LGIV RDSIGRIVCV LKRAN+I+G TTEE+VMRA
Sbjct: 437 EQLIKEEFGVECNFDVVDAVKKLEKLGIVSRDSIGRIVCVPLKRANDIIGQTTEEMVMRA 496
Query: 504 QQSPTAS 510
QQ+ T S
Sbjct: 497 QQASTGS 503
>Os01g0929000 Conserved hypothetical protein
Length = 488
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/477 (71%), Positives = 416/477 (87%)
Query: 30 REVIRMEREAVIPVLKPKLVMKLAYLIEHDLDRSEFLKLCKKIEYTIRAWYLLQFEDLMQ 89
+EV+R+ERE+VIP++KPKL+MKLAYLIE DR EFLKLCK+IEYTIRAWY LQF+D+M+
Sbjct: 12 KEVVRLERESVIPIMKPKLIMKLAYLIEQQSDREEFLKLCKRIEYTIRAWYHLQFDDMME 71
Query: 90 LYSLFDPVSGEKRLEQQNLTPEEIETLEFNFMTYLFQVMEKSNFKLLSDEEYDVAQSGKY 149
L++LFDPV G ++L+QQN + EE++TLE NF+TY FQVM+KSNF +LSD+E ++A SG+Y
Sbjct: 72 LFALFDPVHGAQKLQQQNFSTEEVDTLEQNFLTYFFQVMQKSNFNILSDDEVELAHSGQY 131
Query: 150 LLNLPIKVDEPKLDSKLLSTYFKEHPHDNLPSFANKYIIFRRGIGIDRTTDYFIMEKLDV 209
LLNLPIKVDE KLD+KLLS YFKEH HDNLP F++KY+IFRRGIG+DRT+++F MEK+D+
Sbjct: 132 LLNLPIKVDEAKLDNKLLSKYFKEHHHDNLPEFSDKYVIFRRGIGLDRTSNFFFMEKVDM 191
Query: 210 IISRAWSSLLRVTRIDRLFSKKPQVKSKKDTKKTDEINEDLEEPELFVERIRLEKIELSV 269
II+RAW L TR+ +LFS+K V+ K D+KK D++ + E+ EL+VERIRLE + LS+
Sbjct: 192 IIARAWRWFLEKTRLQKLFSRKKSVRPKTDSKKNDDLVGEEEDKELYVERIRLETMNLSL 251
Query: 270 RNLMSKMTIQEPTFDRMIVVYRRAGTKTKPDRGIFVKHFKNIPMADMEIVLPEKKNPTLT 329
RNL+ K+TIQEPTF+ +IV+YRR K + DR I VKHFKNIPMADME+VLPEKKNP+LT
Sbjct: 252 RNLIGKVTIQEPTFEEVIVLYRRKSPKGQNDRSIHVKHFKNIPMADMELVLPEKKNPSLT 311
Query: 330 PMDWVKFLISAVIGLVTLFGSLEMPKADIWVVIAILSGVIGYCAKIYFTFQQNMTIYQNL 389
PMDWV+F++S VIGLVTL SLEMPKAD WVV+A+LS + GYCAKIY +FQQNM YQNL
Sbjct: 312 PMDWVQFIVSVVIGLVTLVSSLEMPKADFWVVVAVLSALAGYCAKIYLSFQQNMATYQNL 371
Query: 390 ITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISYYILMEQGKATEQDLDLRCEELIKE 449
IT+SMYDKQLDSGKGTLLHLCDDVIQQEVKE+IISYYILME GKAT +DLDL+CEELI+E
Sbjct: 372 ITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEIIISYYILMENGKATIEDLDLQCEELIQE 431
Query: 450 EFGAECNFDVRDAVKKLERLGIVHRDSIGRIVCVSLKRANEILGNTTEELVMRAQQS 506
EFG +CNF+V DAV+KLERLGI+ RDSIGRI C+SLKRANEI+G TTEELVM+A+QS
Sbjct: 432 EFGLQCNFEVMDAVQKLERLGIITRDSIGRICCLSLKRANEIIGATTEELVMKARQS 488
>Os06g0104000 Conserved hypothetical protein
Length = 718
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 123/245 (50%), Gaps = 17/245 (6%)
Query: 272 LMSKMTIQEPTFDRMIVVYRRAGTKTKPDR-----GIFVKHFKNIPMADMEIVLPEKKNP 326
L K T+QEP F +I++Y ++K + +K F+ IP+ D+ +V P KK
Sbjct: 468 LFGKSTLQEPAFQELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLPVVFPHKKL- 526
Query: 327 TLTPMDWVKFLISAVIGLVTL-----FGSLEMPKADIWVVIAILSGVIGYCAKIYFTFQQ 381
+ +D V+ I+ VIGL+ F SL + + I + + ++ ++Q
Sbjct: 527 SFRILDTVRLDIATVIGLLAYVVNYKFESLASSPSAFLLDIVAFTALAILVFRVALGYKQ 586
Query: 382 NMTIYQNLITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISYYILMEQGK---ATEQD 438
YQ L+ K++Y+K L SG G++ L D QQ+ KE +++Y +L+ + K ++
Sbjct: 587 TRDRYQLLVNKTLYEKTLASGFGSVYFLLDASEQQQYKEALLAYGMLLCRKKYQVSSRVS 646
Query: 439 LDLRCEELIKEEFGAECNFDVRDAVKKLERLGIV---HRDSIGRIVCVSLKRANEILGNT 495
+ CE+ + E+F A+ + A++ L RLG+V D R++ + A EIL +
Sbjct: 647 IRDTCEQFMYEKFKAKIEMPIDKAMETLLRLGLVIELPTDGGSRVIALPCSDAYEILKSR 706
Query: 496 TEELV 500
+ L+
Sbjct: 707 WDSLL 711
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,987,526
Number of extensions: 600999
Number of successful extensions: 1464
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1460
Number of HSP's successfully gapped: 4
Length of query: 510
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 405
Effective length of database: 11,553,331
Effective search space: 4679099055
Effective search space used: 4679099055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)