Os12g0479900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0479900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.82 | 0.273 | 11.1 | -0.24 | 0.673 | -0.539 | 0.606 | -0.744 | 0.421 | 6.78 | 25.8 | 70 | -- | -- |
| 33.99 | 0.272 | 11.1 | -0.164 | 0.676 | -0.607 | 0.656 | -- | 0.435 | 6.76 | 25.97 | 66 | -- | -- |
| 34.68 | 0.274 | 11.2 | -0.255 | 0.658 | -0.56 | -- | -1.02 | 0.414 | 6.89 | 25.8 | 79 | -- | -- |
| 34.99 | 0.276 | 11.1 | -0.146 | 0.664 | -0.657 | -- | -- | 0.436 | 6.95 | 26 | 69 | -- | -- |
| 47.29 | 0.32 | 11.2 | -0.204 | -- | -0.936 | -- | -1.07 | 0.47 | -- | 24.8 | 334 | -- | -- |
| 39.53 | 0.295 | 11.1 | -0.253 | 0.827 | -- | 0.978 | -- | 0.415 | 5.99 | -- | -- | -- | -- |
| 41.86 | 0.303 | 11.1 | -0.244 | 0.832 | -- | -- | -- | 0.411 | 6.08 | -- | -- | -- | -- |
| 47.68 | 0.322 | 11.1 | -0.0623 | -- | -1.03 | -- | -- | 0.501 | -- | 25 | 336 | -- | -- |
| 35.53 | 0.278 | 11.1 | -- | 0.653 | -0.689 | -- | -- | 0.455 | 7.03 | 25.9 | 69 | -- | -- |
| 77.78 | 0.412 | 11.2 | -0.22 | -- | -- | -- | -- | 0.43 | -- | -- | -- | -- | -- |
| 43.43 | 0.308 | 11.1 | -- | 0.829 | -- | -- | -- | 0.439 | 6.09 | -- | -- | -- | -- |
| 47.78 | 0.322 | 11.1 | -- | -- | -1.04 | -- | -- | 0.508 | -- | 25 | 338 | -- | -- |
| 79.06 | 0.415 | 11.2 | -- | -- | -- | -- | -- | 0.455 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 4 | 32.86 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 6 | 32.87 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 11 | 32.90 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 22 |
| 13 | 32.98 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 29 | 32.99 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 33 | 33.10 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 48 | 33.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 91 | 33.28 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 120 | 33.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 146 | 33.50 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 149 | 33.54 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 160 | 33.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 169 | 33.56 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 170 | 33.57 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 178 | 33.60 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 10 |
| 201 | 33.64 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 206 | 33.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 223 | 33.70 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 256 | 33.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 269 | 33.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 299 | 33.84 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 22 |
| 319 | 33.85 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 339 | 33.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 366 | 33.86 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 395 | 33.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 396 | 33.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 403 | 33.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 404 | 33.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 415 | 33.90 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 426 | 33.92 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 448 | 33.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 464 | 33.95 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 522 | 34.00 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 574 | 34.03 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 591 | 34.04 | temperature | 30 | 720 | < th | dose independent | sin | 0 | NA |
| 631 | 34.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 736 | 34.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 783 | 34.21 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 792 | 34.22 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 22 |
| 794 | 34.22 | radiation | 40 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 885 | 34.29 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 897 | 34.30 | radiation | 1 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 978 | 34.33 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |