Os01g0929000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0929000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.09 | 0.678 | 3.65 | -1.31 | 0.161 | 0.957 | 0.221 | -1.45 | -0.214 | 4.66 | 18.74 | 714 | -- | -- |
| 209.84 | 0.675 | 3.61 | -1.01 | 0.115 | 0.904 | 0.316 | -- | -0.14 | 4.79 | 18.09 | 779 | -- | -- |
| 208.21 | 0.672 | 3.65 | -1.32 | 0.172 | 0.966 | -- | -1.5 | -0.217 | 4.8 | 18.8 | 705 | -- | -- |
| 210.08 | 0.675 | 3.61 | -1 | 0.0844 | 0.88 | -- | -- | -0.127 | 4.58 | 18.28 | 821 | -- | -- |
| 208.72 | 0.673 | 3.65 | -1.3 | -- | 0.905 | -- | -1.3 | -0.207 | -- | 18.8 | 864 | -- | -- |
| 224.64 | 0.703 | 3.58 | -0.746 | 0.213 | -- | -0.0189 | -- | 0.0347 | 22.8 | -- | -- | -- | -- |
| 224.64 | 0.702 | 3.58 | -0.745 | 0.213 | -- | -- | -- | 0.0348 | 22.8 | -- | -- | -- | -- |
| 210.29 | 0.675 | 3.61 | -1.01 | -- | 0.873 | -- | -- | -0.127 | -- | 18.1 | 883 | -- | -- |
| 233.51 | 0.712 | 3.58 | -- | 0.0891 | 0.571 | -- | -- | 0.0322 | 5.32 | 21.3 | 760 | -- | -- |
| 227.44 | 0.705 | 3.58 | -0.741 | -- | -- | -- | -- | 0.0361 | -- | -- | -- | -- | -- |
| 239.28 | 0.724 | 3.56 | -- | 0.207 | -- | -- | -- | 0.118 | 22.6 | -- | -- | -- | -- |
| 233.59 | 0.712 | 3.57 | -- | -- | 0.527 | -- | -- | 0.0387 | -- | 21.3 | 832 | -- | -- |
| 241.92 | 0.726 | 3.56 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 4 | 205.45 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 6 | 205.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 7 | 205.54 | temperature | 15 | 720 | > th | dose dependent | sin | 17 | NA |
| 18 | 205.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 21 | 205.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 32 | 205.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 43 | 205.94 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 71 | 206.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 144 | 206.53 | temperature | 15 | 270 | > th | dose dependent | sin | 14 | NA |
| 243 | 206.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 288 | 207.04 | temperature | 15 | 10 | > th | dose dependent | sin | 12 | NA |
| 315 | 207.12 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 373 | 207.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 531 | 207.84 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 21 |
| 558 | 207.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 15 |
| 606 | 208.02 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 624 | 208.07 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 625 | 208.07 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 15 |
| 626 | 208.07 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 18 |
| 638 | 208.09 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 15 |
| 696 | 208.24 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 725 | 208.30 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 20 |
| 730 | 208.31 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 22 |
| 731 | 208.31 | wind | 7 | 43200 | > th | dose dependent | sin | 8 | NA |
| 751 | 208.34 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 757 | 208.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 758 | 208.36 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 15 |
| 763 | 208.37 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 773 | 208.38 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 15 |
| 779 | 208.39 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 18 |
| 821 | 208.49 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 827 | 208.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 13 |
| 837 | 208.52 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 859 | 208.56 | wind | 9 | 43200 | < th | dose independent | sin | 9 | NA |
| 886 | 208.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 892 | 208.62 | wind | 9 | 43200 | > th | dose independent | sin | 9 | NA |
| 893 | 208.62 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 933 | 208.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 934 | 208.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 939 | 208.70 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 952 | 208.72 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 961 | 208.73 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 15 |