BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0929000 Os01g0929000|AK073334
(488 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0929000 Conserved hypothetical protein 965 0.0
Os11g0528400 Conserved hypothetical protein 713 0.0
Os12g0479900 Conserved hypothetical protein 703 0.0
Os06g0104000 Conserved hypothetical protein 104 2e-22
>Os01g0929000 Conserved hypothetical protein
Length = 488
Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/466 (100%), Positives = 466/466 (100%)
Query: 23 IPIMKPKLIMKLAYLIEQQSDREEFLKLCKRIEYTIRAWYHLQFDDMMELFALFDPVHGA 82
IPIMKPKLIMKLAYLIEQQSDREEFLKLCKRIEYTIRAWYHLQFDDMMELFALFDPVHGA
Sbjct: 23 IPIMKPKLIMKLAYLIEQQSDREEFLKLCKRIEYTIRAWYHLQFDDMMELFALFDPVHGA 82
Query: 83 QKLQQQNFSTEEVDTLEQNFLTYFFQVMQKSNFNILSDDEVELAHSGQYLLNLPIKVDEA 142
QKLQQQNFSTEEVDTLEQNFLTYFFQVMQKSNFNILSDDEVELAHSGQYLLNLPIKVDEA
Sbjct: 83 QKLQQQNFSTEEVDTLEQNFLTYFFQVMQKSNFNILSDDEVELAHSGQYLLNLPIKVDEA 142
Query: 143 KLDNKLLSKYFKEHHHDNLPEFSDKYVIFRRGIGLDRTSNFFFMEKVDMIIARAWRWFLE 202
KLDNKLLSKYFKEHHHDNLPEFSDKYVIFRRGIGLDRTSNFFFMEKVDMIIARAWRWFLE
Sbjct: 143 KLDNKLLSKYFKEHHHDNLPEFSDKYVIFRRGIGLDRTSNFFFMEKVDMIIARAWRWFLE 202
Query: 203 KTRLQKLFSRKKSVRPKTDSKKNDDLVGEEEDKELYVERIRLETMNLSLRNLIGKVTIQE 262
KTRLQKLFSRKKSVRPKTDSKKNDDLVGEEEDKELYVERIRLETMNLSLRNLIGKVTIQE
Sbjct: 203 KTRLQKLFSRKKSVRPKTDSKKNDDLVGEEEDKELYVERIRLETMNLSLRNLIGKVTIQE 262
Query: 263 PTFEEVIVLYRRKSPKGQNDRSIHVKHFKNIPMADMELVLPEKKNPSLTPMDWVQFIVSV 322
PTFEEVIVLYRRKSPKGQNDRSIHVKHFKNIPMADMELVLPEKKNPSLTPMDWVQFIVSV
Sbjct: 263 PTFEEVIVLYRRKSPKGQNDRSIHVKHFKNIPMADMELVLPEKKNPSLTPMDWVQFIVSV 322
Query: 323 VIGLVTLVSSLEMPKADFWVVVAVLSALAGYCAKIYLSFQQNMATYQNLITQSMYDKQLD 382
VIGLVTLVSSLEMPKADFWVVVAVLSALAGYCAKIYLSFQQNMATYQNLITQSMYDKQLD
Sbjct: 323 VIGLVTLVSSLEMPKADFWVVVAVLSALAGYCAKIYLSFQQNMATYQNLITQSMYDKQLD 382
Query: 383 SGKGTLLHLCDDVIQQEVKEIIISYYILMENGKATIEDLDLQCEELIQEEFGLQCNFEVM 442
SGKGTLLHLCDDVIQQEVKEIIISYYILMENGKATIEDLDLQCEELIQEEFGLQCNFEVM
Sbjct: 383 SGKGTLLHLCDDVIQQEVKEIIISYYILMENGKATIEDLDLQCEELIQEEFGLQCNFEVM 442
Query: 443 DAVQKLERLGIITRDSIGRICCLSLKRANEIIGATTEELVMKARQS 488
DAVQKLERLGIITRDSIGRICCLSLKRANEIIGATTEELVMKARQS
Sbjct: 443 DAVQKLERLGIITRDSIGRICCLSLKRANEIIGATTEELVMKARQS 488
>Os11g0528400 Conserved hypothetical protein
Length = 503
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/466 (69%), Positives = 409/466 (87%)
Query: 23 IPIMKPKLIMKLAYLIEQQSDREEFLKLCKRIEYTIRAWYHLQFDDMMELFALFDPVHGA 82
IPI+KPKLIMKLAYL+EQ DR EFLKLC+R+EYTIRAWY LQF+D+M+L+ALFDPV+G
Sbjct: 34 IPILKPKLIMKLAYLVEQDKDRGEFLKLCRRVEYTIRAWYLLQFEDLMQLYALFDPVNGV 93
Query: 83 QKLQQQNFSTEEVDTLEQNFLTYFFQVMQKSNFNILSDDEVELAHSGQYLLNLPIKVDEA 142
+ L+QQ+ + +E++TLE NFLTY FQ+M+KSNF +LSD+E ++A SGQYLLNLPIKVDE+
Sbjct: 94 KSLEQQSLTPDEIETLELNFLTYMFQIMEKSNFKLLSDEEYDVAQSGQYLLNLPIKVDES 153
Query: 143 KLDNKLLSKYFKEHHHDNLPEFSDKYVIFRRGIGLDRTSNFFFMEKVDMIIARAWRWFLE 202
K+D KLL++YFK H HDNLP DKY+IFRRGIG+DRT+++FFMEKVD+II+R WR L
Sbjct: 154 KVDKKLLTRYFKAHPHDNLPASVDKYIIFRRGIGIDRTTDYFFMEKVDVIISRVWRSLLR 213
Query: 203 KTRLQKLFSRKKSVRPKTDSKKNDDLVGEEEDKELYVERIRLETMNLSLRNLIGKVTIQE 262
T++ +LFS+KK +R K D KK D++ E E++E VERIRLE M LS++NL+ ++TIQE
Sbjct: 214 VTKIDRLFSKKKQLRAKKDPKKTDEVNEEVEEQEFSVERIRLEKMELSIKNLLSQMTIQE 273
Query: 263 PTFEEVIVLYRRKSPKGQNDRSIHVKHFKNIPMADMELVLPEKKNPSLTPMDWVQFIVSV 322
PTFE +IV+YR+ S + + DR I VKHFKNIPMADMELVLPEKKNPSLTPMDWV+F++S
Sbjct: 274 PTFERMIVVYRKSSTEAKPDRGIFVKHFKNIPMADMELVLPEKKNPSLTPMDWVKFLISA 333
Query: 323 VIGLVTLVSSLEMPKADFWVVVAVLSALAGYCAKIYLSFQQNMATYQNLITQSMYDKQLD 382
V+GLVTL+ SLEMPKAD WVV+A+LS L GYCAKIY +FQ NM +YQNLIT+SMYDKQLD
Sbjct: 334 VLGLVTLIGSLEMPKADIWVVIAILSGLIGYCAKIYFTFQANMVSYQNLITKSMYDKQLD 393
Query: 383 SGKGTLLHLCDDVIQQEVKEIIISYYILMENGKATIEDLDLQCEELIQEEFGLQCNFEVM 442
SGKGTLLHLCDDVIQQEVKE+I+SYYILME GKAT++DLDL+CE+LI+EEFG++CNF+V+
Sbjct: 394 SGKGTLLHLCDDVIQQEVKEVIVSYYILMEQGKATVQDLDLRCEQLIKEEFGVECNFDVV 453
Query: 443 DAVQKLERLGIITRDSIGRICCLSLKRANEIIGATTEELVMKARQS 488
DAV+KLE+LGI++RDSIGRI C+ LKRAN+IIG TTEE+VM+A+Q+
Sbjct: 454 DAVKKLEKLGIVSRDSIGRIVCVPLKRANDIIGQTTEEMVMRAQQA 499
>Os12g0479900 Conserved hypothetical protein
Length = 510
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/466 (71%), Positives = 405/466 (86%)
Query: 23 IPIMKPKLIMKLAYLIEQQSDREEFLKLCKRIEYTIRAWYHLQFDDMMELFALFDPVHGA 82
IP++KPKL+MKLAYLIE DR EFLKLCK+IEYTIRAWY LQF+D+M+L++LFDPV G
Sbjct: 41 IPVLKPKLVMKLAYLIEHDLDRSEFLKLCKKIEYTIRAWYLLQFEDLMQLYSLFDPVSGE 100
Query: 83 QKLQQQNFSTEEVDTLEQNFLTYFFQVMQKSNFNILSDDEVELAHSGQYLLNLPIKVDEA 142
++L+QQN + EE++TLE NF+TY FQVM+KSNF +LSD+E ++A SG+YLLNLPIKVDE
Sbjct: 101 KRLEQQNLTPEEIETLEFNFMTYLFQVMEKSNFKLLSDEEYDVAQSGKYLLNLPIKVDEP 160
Query: 143 KLDNKLLSKYFKEHHHDNLPEFSDKYVIFRRGIGLDRTSNFFFMEKVDMIIARAWRWFLE 202
KLD+KLLS YFKEH HDNLP F++KY+IFRRGIG+DRT+++F MEK+D+II+RAW L
Sbjct: 161 KLDSKLLSTYFKEHPHDNLPSFANKYIIFRRGIGIDRTTDYFIMEKLDVIISRAWSSLLR 220
Query: 203 KTRLQKLFSRKKSVRPKTDSKKNDDLVGEEEDKELYVERIRLETMNLSLRNLIGKVTIQE 262
TR+ +LFS+K V+ K D+KK D++ + E+ EL+VERIRLE + LS+RNL+ K+TIQE
Sbjct: 221 VTRIDRLFSKKPQVKSKKDTKKTDEINEDLEEPELFVERIRLEKIELSVRNLMSKMTIQE 280
Query: 263 PTFEEVIVLYRRKSPKGQNDRSIHVKHFKNIPMADMELVLPEKKNPSLTPMDWVQFIVSV 322
PTF+ +IV+YRR K + DR I VKHFKNIPMADME+VLPEKKNP+LTPMDWV+F++S
Sbjct: 281 PTFDRMIVVYRRAGTKTKPDRGIFVKHFKNIPMADMEIVLPEKKNPTLTPMDWVKFLISA 340
Query: 323 VIGLVTLVSSLEMPKADFWVVVAVLSALAGYCAKIYLSFQQNMATYQNLITQSMYDKQLD 382
VIGLVTL SLEMPKAD WVV+A+LS + GYCAKIY +FQQNM YQNLIT+SMYDKQLD
Sbjct: 341 VIGLVTLFGSLEMPKADIWVVIAILSGVIGYCAKIYFTFQQNMTIYQNLITKSMYDKQLD 400
Query: 383 SGKGTLLHLCDDVIQQEVKEIIISYYILMENGKATIEDLDLQCEELIQEEFGLQCNFEVM 442
SGKGTLLHLCDDVIQQEVKE+IISYYILME GKAT +DLDL+CEELI+EEFG +CNF+V
Sbjct: 401 SGKGTLLHLCDDVIQQEVKEVIISYYILMEQGKATEQDLDLRCEELIKEEFGAECNFDVR 460
Query: 443 DAVQKLERLGIITRDSIGRICCLSLKRANEIIGATTEELVMKARQS 488
DAV+KLERLGI+ RDSIGRI C+SLKRANEI+G TTEELVM+A+QS
Sbjct: 461 DAVKKLERLGIVHRDSIGRIVCVSLKRANEILGNTTEELVMRAQQS 506
>Os06g0104000 Conserved hypothetical protein
Length = 718
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 131/257 (50%), Gaps = 23/257 (8%)
Query: 245 ETMNLSLRNLIGKVTIQEPTFEEVIVLYRRKSPKGQNDR-----SIHVKHFKNIPMADME 299
E S L GK T+QEP F+E+I+LY ++ + + + +K F+ IP+ D+
Sbjct: 459 EITKASFGVLFGKSTLQEPAFQELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLP 518
Query: 300 LVLPEKKNPSLTPMDWVQFIVSVVIGLVTLV-----SSLEMPKADFWVVVAVLSALAGYC 354
+V P KK S +D V+ ++ VIGL+ V SL + F + + +ALA
Sbjct: 519 VVFPHKKL-SFRILDTVRLDIATVIGLLAYVVNYKFESLASSPSAFLLDIVAFTALAILV 577
Query: 355 AKIYLSFQQNMATYQNLITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEIIISYYILM--- 411
++ L ++Q YQ L+ +++Y+K L SG G++ L D QQ+ KE +++Y +L+
Sbjct: 578 FRVALGYKQTRDRYQLLVNKTLYEKTLASGFGSVYFLLDASEQQQYKEALLAYGMLLCRK 637
Query: 412 ---ENGKATIEDLDLQCEELIQEEFGLQCNFEVMDAVQKLERLGII---TRDSIGRICCL 465
+ + +I D CE+ + E+F + + A++ L RLG++ D R+ L
Sbjct: 638 KYQVSSRVSIRD---TCEQFMYEKFKAKIEMPIDKAMETLLRLGLVIELPTDGGSRVIAL 694
Query: 466 SLKRANEIIGATTEELV 482
A EI+ + + L+
Sbjct: 695 PCSDAYEILKSRWDSLL 711
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,156,965
Number of extensions: 576711
Number of successful extensions: 1488
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1485
Number of HSP's successfully gapped: 4
Length of query: 488
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 383
Effective length of database: 11,553,331
Effective search space: 4424925773
Effective search space used: 4424925773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)