Os11g0528400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0528400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.61 | 0.417 | 3.59 | -0.212 | 0.438 | -0.225 | -0.72 | 0.839 | -0.133 | 5.55 | 9.996 | 4331 | -- | -- |
| 79.58 | 0.415 | 3.59 | -0.225 | 0.439 | -0.26 | -0.72 | -- | -0.133 | 5.56 | 9.986 | 4340 | -- | -- |
| 79.89 | 0.416 | 3.59 | -0.214 | 0.437 | -0.221 | -- | 0.862 | -0.133 | 5.59 | 9.976 | 4330 | -- | -- |
| 80.62 | 0.418 | 3.59 | -0.213 | 0.436 | -0.268 | -- | -- | -0.131 | 5.58 | 9.96 | 5843 | -- | -- |
| 89.69 | 0.441 | 3.59 | -0.193 | -- | -0.239 | -- | 0.855 | -0.132 | -- | 9.972 | 4324 | -- | -- |
| 80.66 | 0.421 | 3.61 | -0.299 | 0.438 | -- | -0.721 | -- | -0.127 | 5.56 | -- | -- | -- | -- |
| 81.94 | 0.424 | 3.6 | -0.302 | 0.434 | -- | -- | -- | -0.124 | 5.62 | -- | -- | -- | -- |
| 90.09 | 0.442 | 3.62 | -0.224 | -- | -0.297 | -- | -- | -0.188 | -- | 9.91 | 7186 | -- | -- |
| 81.54 | 0.421 | 3.59 | -- | 0.435 | -0.269 | -- | -- | -0.131 | 5.58 | 10 | 7248 | -- | -- |
| 91.7 | 0.447 | 3.61 | -0.288 | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
| 84.33 | 0.43 | 3.6 | -- | 0.429 | -- | -- | -- | -0.0904 | 5.65 | -- | -- | -- | -- |
| 90.69 | 0.444 | 3.61 | -- | -- | -0.319 | -- | -- | -0.158 | -- | 9.982 | 7264 | -- | -- |
| 93.89 | 0.452 | 3.6 | -- | -- | -- | -- | -- | -0.0817 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.99 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 5 |
| 4 | 76.15 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 7 | 76.27 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 10 | 76.34 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 22 | 76.42 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 27 | 76.44 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 28 | 76.45 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 51 | 76.67 | radiation | 10 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 54 | 76.71 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 1 |
| 70 | 76.75 | radiation | 10 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 71 | 76.76 | radiation | 10 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 72 | 76.76 | radiation | 10 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 77 | 76.80 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 1 |
| 84 | 76.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 96 | 77.02 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 1 |
| 107 | 77.02 | radiation | 1 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 126 | 77.13 | radiation | 20 | 720 | < th | dose independent | rect. | 14 | 14 |
| 127 | 77.15 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 146 | 77.21 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 150 | 77.27 | radiation | 20 | 720 | < th | dose independent | rect. | 14 | 5 |
| 156 | 77.30 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 10 |
| 180 | 77.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 182 | 77.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 185 | 77.42 | radiation | 40 | 43200 | > th | dose independent | sin | 14 | NA |
| 191 | 77.46 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 4 |
| 246 | 77.56 | radiation | 10 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 251 | 77.59 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 281 | 77.61 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 282 | 77.61 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 285 | 77.62 | humidity | 90 | 270 | < th | dose independent | rect. | 10 | 18 |
| 286 | 77.62 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 291 | 77.63 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 296 | 77.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 300 | 77.65 | radiation | 30 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 301 | 77.65 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 24 | 4 |
| 303 | 77.66 | radiation | 40 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 344 | 77.68 | radiation | 1 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 478 | 77.74 | humidity | 90 | 270 | < th | dose independent | rect. | 10 | 20 |
| 480 | 77.74 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 484 | 77.74 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 505 | 77.75 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 517 | 77.76 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 1 |
| 548 | 77.78 | temperature | 15 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 549 | 77.78 | humidity | 90 | 10 | < th | dose independent | rect. | 24 | 1 |
| 550 | 77.78 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 19 |
| 554 | 77.78 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 24 | 6 |
| 556 | 77.78 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 596 | 77.79 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 598 | 77.80 | temperature | 15 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 607 | 77.80 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 613 | 77.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 629 | 77.81 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 636 | 77.81 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 11 |
| 651 | 77.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 656 | 77.83 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 700 | 77.84 | radiation | 30 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 723 | 77.85 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 739 | 77.85 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 13 |
| 741 | 77.85 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 16 |
| 744 | 77.85 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 20 |
| 753 | 77.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 772 | 77.87 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 800 | 77.87 | radiation | 10 | 43200 | < th | dose dependent | sin | 2 | NA |
| 802 | 77.87 | radiation | 30 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 803 | 77.87 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 975 | 77.89 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 5 |