BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0929000 Os01g0929000|AK073334
(488 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19340.1 | chr3:6701387-6704071 REVERSE LENGTH=488 706 0.0
AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810 544 e-155
AT2G46915.1 | chr2:19274018-19277707 REVERSE LENGTH=709 103 2e-22
>AT3G19340.1 | chr3:6701387-6704071 REVERSE LENGTH=488
Length = 487
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/466 (68%), Positives = 404/466 (86%)
Query: 23 IPIMKPKLIMKLAYLIEQQSDREEFLKLCKRIEYTIRAWYHLQFDDMMELFALFDPVHGA 82
IPI+KPKLIM LA LIE +DR+EFLKLCKRIEYT+RAWY LQF+D+M+L++LFDPVHGA
Sbjct: 18 IPILKPKLIMTLANLIEHSNDRQEFLKLCKRIEYTVRAWYLLQFEDLMQLYSLFDPVHGA 77
Query: 83 QKLQQQNFSTEEVDTLEQNFLTYFFQVMQKSNFNILSDDEVELAHSGQYLLNLPIKVDEA 142
QK+QQQN +++E+D LEQNFL Y FQVM+KSNF I S++E+E+AHSGQYLLNLPIKVDE+
Sbjct: 78 QKIQQQNLTSQEIDVLEQNFLAYLFQVMEKSNFKITSNEEMEVAHSGQYLLNLPIKVDES 137
Query: 143 KLDNKLLSKYFKEHHHDNLPEFSDKYVIFRRGIGLDRTSNFFFMEKVDMIIARAWRWFLE 202
KLD KLL +YF+EH H+N+P+FSDKYVIFRRGIGLD+T+++FFMEK+D+II+R W + +
Sbjct: 138 KLDKKLLKRYFEEHPHENIPDFSDKYVIFRRGIGLDKTTDYFFMEKLDVIISRFWSFLMR 197
Query: 203 KTRLQKLFSRKKSVRPKTDSKKNDDLVGEEEDKELYVERIRLETMNLSLRNLIGKVTIQE 262
TRL+KL +++ S K D KK+D+ + ++ ELYVERIRLE LS ++ + K+TIQE
Sbjct: 198 ITRLEKLRAKRSSSLNKKDPKKDDEPNPDTDNDELYVERIRLENSKLSFKSFLSKLTIQE 257
Query: 263 PTFEEVIVLYRRKSPKGQNDRSIHVKHFKNIPMADMELVLPEKKNPSLTPMDWVQFIVSV 322
PTF+ +IV+YRR S K +R I+VKHFKNIPMADME+VLPEK+NP LTPMDWV+F++S
Sbjct: 258 PTFDRMIVVYRRASSKTNLERGIYVKHFKNIPMADMEIVLPEKRNPGLTPMDWVKFLISA 317
Query: 323 VIGLVTLVSSLEMPKADFWVVVAVLSALAGYCAKIYLSFQQNMATYQNLITQSMYDKQLD 382
V+GLV +++S+EMPK+D WV++A+LS + GYCAK Y +FQQNMATYQNLITQSMYDKQLD
Sbjct: 318 VVGLVAVLTSVEMPKSDPWVIIAILSTVLGYCAKTYFTFQQNMATYQNLITQSMYDKQLD 377
Query: 383 SGKGTLLHLCDDVIQQEVKEIIISYYILMENGKATIEDLDLQCEELIQEEFGLQCNFEVM 442
SG+GTLLHLCDDVIQQEVKE++I +YILME GKAT+EDLDL+CEELI+EEFG +CNF+V
Sbjct: 378 SGRGTLLHLCDDVIQQEVKEVMICFYILMEQGKATLEDLDLRCEELIKEEFGARCNFDVE 437
Query: 443 DAVQKLERLGIITRDSIGRICCLSLKRANEIIGATTEELVMKARQS 488
DAVQKLE+LGI+ RD+IGR C+ LKRANEIIG TTEELV+KA+Q
Sbjct: 438 DAVQKLEKLGIVARDTIGRYYCMGLKRANEIIGTTTEELVLKAKQG 483
>AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810
Length = 809
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 255/458 (55%), Positives = 350/458 (76%), Gaps = 4/458 (0%)
Query: 32 MKLAYLIEQQSDREEFLKLCKRIEYTIRAWYHLQFDDMMELFALFDPVHGAQKLQQQNFS 91
+K Y I+ + +REEFL+ C+R+E TIRAWYHL F+D+M+L++LF+PV GA +L QQN S
Sbjct: 315 IKREYNIKDKWEREEFLRFCQRVECTIRAWYHLHFEDLMQLYSLFEPVRGAHRLNQQNLS 374
Query: 92 TEEVDTLEQNFLTYFFQVMQKSNFNILSDDEVELAHSGQYLLNLPIKVDEAKLDNKLLSK 151
T E+D LE FL + FQVM+KSNF +++++E+++A S QY LNLPI V+EAKLD KLL++
Sbjct: 375 TREIDALEDQFLLHLFQVMEKSNFKVITNEEIQVALSAQYRLNLPIVVNEAKLDTKLLTR 434
Query: 152 YFKEHHHDNLPEFSDKYVIFRRGIGLDRTSNFFFMEKVDMIIARAWRWFLEKTRLQKLFS 211
YF + D+LP F+DKY+IFRRG G+D +FF+ K+D I+ R W + L T L++L
Sbjct: 435 YFSKFPRDDLPHFADKYIIFRRGFGIDHMKAYFFLAKIDTILVRIWHFLLTITCLKRLVY 494
Query: 212 RKKSVRPKTDSKKNDDLVGEEEDKELYVERIRLETMNLSLRNLIGKVTIQEPTFEEVIVL 271
KK+ + D+ E E LY+ERIR+E + LSL NL+ K+TIQEPTFE +IV+
Sbjct: 495 GKKN---DVGLSEQIDISIETEKDSLYIERIRIEKLKLSLSNLMKKITIQEPTFERIIVV 551
Query: 272 YRRKSPKGQNDRSIHVKHFKNIPMADMELVLPEKKNPSLTPMDWVQFIVSVVIGLVTLVS 331
YRR S K +++R+I+VKHFK IPMADME+VLPEKKNP LTP+DWV+F+VS IGLVT+VS
Sbjct: 552 YRRVSGKKESERNIYVKHFKTIPMADMEIVLPEKKNPGLTPLDWVKFLVSAAIGLVTVVS 611
Query: 332 SLEMPKADFWVVVAVLSALAGYCAKIYLSFQQNMATYQNLITQSMYDKQLDSGKGTLLHL 391
S+ + KAD V+ A+LS + YC K Y +FQ+N+ YQ+LIT+S+YDKQLDSG+GTLLHL
Sbjct: 612 SVSLKKADIRVIAAILSTVVAYCVKTYFTFQRNLVDYQSLITRSVYDKQLDSGRGTLLHL 671
Query: 392 CDDVIQQEVKEIIISYYILMENGKATI-EDLDLQCEELIQEEFGLQCNFEVMDAVQKLER 450
CD+VIQQEVKE+IIS+++L++ G T E+LD++ E I+EEF CNF+V DA+ KLE+
Sbjct: 672 CDEVIQQEVKEVIISFFMLIKKGCPTSKEELDMKSEAFIKEEFNESCNFDVDDAITKLEK 731
Query: 451 LGIITRDSIGRICCLSLKRANEIIGATTEELVMKARQS 488
LG+++RDS + C+ +K ANEI+G TTEE+V+KARQ
Sbjct: 732 LGLVSRDSEDKYRCVEMKEANEIMGTTTEEMVLKARQG 769
>AT2G46915.1 | chr2:19274018-19277707 REVERSE LENGTH=709
Length = 708
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 120/221 (54%), Gaps = 17/221 (7%)
Query: 250 SLRNLIGKVTIQEPTFEEVIVLYRRKSP------KGQNDRSIHVKHFKNIPMADMELVLP 303
S+ L+ T+QEP FEE+I+LY + + K + S+ ++ F+ IP+ D+ ++ P
Sbjct: 459 SISILLSPSTLQEPAFEELILLYTKDASEKDDKNKDETRSSLQLEIFERIPIPDLPVIFP 518
Query: 304 EKKNPSLTPMDWVQFIVSVVIGLVTLVSSLEM------PKADFWVVVAVLSALAGYCAKI 357
KK +D V+ ++ ++GL + + P A F V+AV +AL Y ++
Sbjct: 519 HKK-LYFRIIDTVRLDIASILGLTAYFVNYKFENISSSPSAFFLDVIAV-TALVIYATRV 576
Query: 358 YLSFQQNMATYQNLITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEIIISYYILMENGK-- 415
L ++Q YQ L+ +++Y+K L SG G++ L D QQ+ KE I++Y I+++ GK
Sbjct: 577 VLGYKQTWDRYQLLVNKTLYEKTLASGFGSVHFLLDASEQQQYKEAILTYAIILQAGKNQ 636
Query: 416 -ATIEDLDLQCEELIQEEFGLQCNFEVMDAVQKLERLGIIT 455
+ + + +CE + + F ++ V A+ L RLG++T
Sbjct: 637 NMSYKGVGDRCERFMYDTFKIKVEMRVEKAISTLVRLGLVT 677
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,887,742
Number of extensions: 431511
Number of successful extensions: 1364
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1359
Number of HSP's successfully gapped: 3
Length of query: 488
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 386
Effective length of database: 8,310,137
Effective search space: 3207712882
Effective search space used: 3207712882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)