BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0271700 Os12g0271700|AK110824
(372 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0271700 Similar to Solanesyl diphosphate synthase 1 699 0.0
AK066579 619 e-177
Os06g0678200 Similar to Geranyl diphosphate synthase 232 3e-61
Os07g0580900 Similar to GGDP synthase 109 3e-24
Os01g0248701 Polyprenyl synthetase family protein 101 9e-22
Os08g0193100 Similar to Geranyl diphosphate synthase 86 6e-17
>Os12g0271700 Similar to Solanesyl diphosphate synthase 1
Length = 372
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/372 (93%), Positives = 347/372 (93%)
Query: 1 GRAAPPTRRAPGVCSVVSPSKPGVAAVDVPAATIPDAAATGVGVAERISVSSLLEVVADD 60
GRAAPPTRRAPGVCSVVSPSKPGVAAVDVPAATIPDAAATGVGVAERISVSSLLEVVADD
Sbjct: 1 GRAAPPTRRAPGVCSVVSPSKPGVAAVDVPAATIPDAAATGVGVAERISVSSLLEVVADD 60
Query: 61 XXXXXXXXXXXVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRXXXXXXXXXXXXXXHQ 120
VGAENPVLVSAAEQIFGAGGKRLRPALVFLVSR HQ
Sbjct: 61 LLKLNNNLKSLVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQ 120
Query: 121 RLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLE 180
RLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLE
Sbjct: 121 RLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLE 180
Query: 181 NIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAIFSG 240
NIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAIFSG
Sbjct: 181 NIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAIFSG 240
Query: 241 VSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDE 300
VSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDE
Sbjct: 241 VSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDE 300
Query: 301 PQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRSEFRSTL 360
PQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRSEFRSTL
Sbjct: 301 PQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRSEFRSTL 360
Query: 361 ENMVKYNLERID 372
ENMVKYNLERID
Sbjct: 361 ENMVKYNLERID 372
>AK066579
Length = 403
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 305/372 (81%), Positives = 327/372 (87%), Gaps = 1/372 (0%)
Query: 1 GRAAPPTRRAPGVCSVVSPSKPGVAAVDVPAATIPDAAATGVGVAERISVSSLLEVVADD 60
G P RR P VC V SPS+PG+AAVDVPA I A T + + ERISVSSLLEVV+DD
Sbjct: 33 GMRVAPRRRMPCVCFVASPSQPGLAAVDVPAEAISSARTTTM-IPERISVSSLLEVVSDD 91
Query: 61 XXXXXXXXXXXVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRXXXXXXXXXXXXXXHQ 120
VGAENPVLVSAAEQIFGAGGKRLRPALVFLVSR HQ
Sbjct: 92 LLKLNNNLKSLVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQ 151
Query: 121 RLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLE 180
RLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLE
Sbjct: 152 RLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLE 211
Query: 181 NIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAIFSG 240
NIEVIKLISQVIKDFASGEIKQASTLFDCD+TLDDYLLKSYYKTASL+A+STRSAAIFSG
Sbjct: 212 NIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSG 271
Query: 241 VSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDE 300
VST ICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDE
Sbjct: 272 VSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDE 331
Query: 301 PQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRSEFRSTL 360
P+LREIIDSEFSE++SLATAI+LVHRSGGI+RA ELA+EKG++A+Q+LQCLP+S+FRSTL
Sbjct: 332 PKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQFRSTL 391
Query: 361 ENMVKYNLERID 372
EN+VKYNL+RID
Sbjct: 392 ENVVKYNLQRID 403
>Os06g0678200 Similar to Geranyl diphosphate synthase
Length = 430
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 191/315 (60%), Gaps = 13/315 (4%)
Query: 54 LEVVADDXXXXXXXXXXXVGAENPVLVSAAEQIF--GAGGKRLRPALVFLV--------- 102
E+VAD+ V AE P L SAAE F GA GKR RP ++ L+
Sbjct: 93 FELVADELSLLANRLRSMVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKFPLS 152
Query: 103 --SRXXXXXXXXXXXXXXHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRV 160
+ Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G ++
Sbjct: 153 DSTEVGVLTILANKLRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMGNKL 212
Query: 161 AVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKS 220
+VLAGDF+ +++ LA L N EV+ L++ ++ +GE Q ST + ++D YL K+
Sbjct: 213 SVLAGDFLLSRACVALAALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYLQKT 272
Query: 221 YYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPA 280
YYKTASLI+ S ++ AI +G + + YEYGRNLGL+FQ++DD+LDFT ++ LGK +
Sbjct: 273 YYKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGS 332
Query: 281 GSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREK 340
+D+ G +TAP+++A+++ PQL E++D F ++ A++ + +S GI++ ELARE
Sbjct: 333 LTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELAREH 392
Query: 341 GEIAIQSLQCLPRSE 355
AI++++ LP S+
Sbjct: 393 ANRAIKAIEALPDSD 407
>Os07g0580900 Similar to GGDP synthase
Length = 366
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 129/261 (49%), Gaps = 32/261 (12%)
Query: 89 AGGKRLRPALVFLVSRXXXXXXXXXXXXXXHQRLAEIIEMIHTASLIHDDVIDDSG--MR 146
AGGKR+RPAL A +EM+HT SL+HDD+ +R
Sbjct: 104 AGGKRVRPALCL------AACAVVGGREAWAMPAAAAVEMVHTMSLVHDDLPCMDDDDLR 157
Query: 147 RGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLE----NIEVIKLISQVIKDFASGEIKQ 202
RGK T H +YG +AVL GD + + S +A + +I+ K ++V++ A GE+ +
Sbjct: 158 RGKPTCHVVYGEPIAVLTGDALLSLSFHHMARFDSYPPDIDADKHPARVVR--AIGELAR 215
Query: 203 --------ASTLFDCDIT-------LDDYLLKSYYKTASLIAASTRSAAIFSGVSTAICE 247
A + D ++T L+ +KTA+L+ AS AI G S E
Sbjct: 216 CIGSEGLVAGQVVDLEMTGSTETVPLERLEYIHLHKTAALLEASVVIGAILGGGSDEQIE 275
Query: 248 QMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPQLREII 307
+ Y R++GL FQVVDDILD T+S+E+LGK AG DLA T P + L+ + E +
Sbjct: 276 SLRMYARSIGLLFQVVDDILDVTKSSEELGKTAGKDLASDKTTYPKLLGLEKSREFAEKL 335
Query: 308 DSEFSETNS---LATAIELVH 325
S+ E S TA L+H
Sbjct: 336 LSDAREQLSGFDQETAAPLLH 356
>Os01g0248701 Polyprenyl synthetase family protein
Length = 376
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 22/223 (9%)
Query: 89 AGGKRLRPALVFLVSRXXXXXXXXXXXXXXHQRLAEIIEMIHTASLIHDDV--IDDSGMR 146
AGGKR+RP L A +EMIHT SLIHDD+ +DD +R
Sbjct: 121 AGGKRVRPVLALAACELVGGDAAAATPV------ACAVEMIHTMSLIHDDMPCMDDDALR 174
Query: 147 RGKETIHQLYGTRVAVLAGDFMFAQSSWFLA------NLENIEVIKLISQV-----IKDF 195
RG+ + H +G A+LAGD + A + +A + ++ ++++
Sbjct: 175 RGRPSNHVAFGEFTALLAGDALHALAFEHVARGCGDHGVPADRTLRAVAELGSASGTGGV 234
Query: 196 ASGEI-KQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGR 254
A+G++ + S + + +Y+ +KTA L+ A+ S AI G + A E++ Y R
Sbjct: 235 AAGQVADKESEGLPVSLAMLEYI--HVHKTARLLEAAAVSGAIVGGGADAEVERVRRYAR 292
Query: 255 NLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFAL 297
+GL FQVVDD+LD T ++EQLGK AG D+ T P + +
Sbjct: 293 CVGLLFQVVDDVLDMTSTSEQLGKTAGKDVEADKATYPKLLGV 335
>Os08g0193100 Similar to Geranyl diphosphate synthase
Length = 129
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 71/104 (68%)
Query: 257 GLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNS 316
G+++Q++DDILDFT ++ LGK + SD+ +G +TAP++FA+++ PQLR I++ F + ++
Sbjct: 8 GIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQGFDDPSN 67
Query: 317 LATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRSEFRSTL 360
+ A+ + RS GI+R LA E ++A ++ LP S+ S L
Sbjct: 68 VDAALAYLARSKGIERTRLLAAEHAKLAADAIDALPESKDGSVL 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,842,051
Number of extensions: 404159
Number of successful extensions: 1295
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1288
Number of HSP's successfully gapped: 6
Length of query: 372
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 270
Effective length of database: 11,709,973
Effective search space: 3161692710
Effective search space used: 3161692710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)