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Os08g0193100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Geranyl diphosphate synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.88 (0.0336) R2 : 0.888
β1 : -4.38 (0.123) R2dD : 0.329 R2D : 0.282
β2 : 1.57 (0.107) R2dC : 0.0918 R2C : 0.299
β3 : 3.03 (0.119) R2dE : 0.275 R2E : 0.469
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.667 (0.0716) R2dN8 : 0.0301 R2N8 : -0.00547
σ : 0.627
deviance : 181.24
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C
peak time of C : 10.4
E
wheather : temperature
threshold : 5.15
memory length : 268
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.03
open length of G : 8.33

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.4 0.613 6.9 -4.4 1.61 3.02 -1.24 -0.713 -0.716 10.7 7.504 267 7.08 8.22
171 0.609 6.88 -4.34 1.61 3 -1.42 -- -0.679 10.7 7.118 267 7.02 8.23
173.94 0.614 6.89 -4.44 1.63 3.07 -- -1.78 -0.679 10.5 7.237 259 7.22 8.27
181.24 0.627 6.88 -4.38 1.57 3.03 -- -- -0.667 10.4 5.15 268 7.03 8.33
196.75 0.653 6.94 -4.21 -- 3.87 -- -1.47 -0.691 -- -19.8 321 5.22 9.42
243.38 0.731 6.87 -4.19 3.71 -- -1.1 -- -0.676 12.5 -- -- -- --
248.6 0.738 6.87 -4.23 3.72 -- -- -- -0.682 12.5 -- -- -- --
205.58 0.668 6.94 -4.32 -- 3.98 -- -- -0.726 -- -10.62 321 5.2 9.4
669.87 1.21 6.74 -- 1.85 2.18 -- -- -0.12 11.4 -25.95 225 7.43 8.13
1115.62 1.56 6.95 -4.36 -- -- -- -- -0.743 -- -- -- -- --
721.02 1.26 6.77 -- 3.78 -- -- -- -0.21 12.5 -- -- -- --
689.32 1.22 6.84 -- -- 3.81 -- -- -0.205 -- -46.15 369 4.73 9.4
1617.38 1.88 6.84 -- -- -- -- -- -0.259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.85 temperature 10.0 270 > th dose dependent rect. 7 8
2 174.67 temperature 10.0 270 > th dose dependent rect. 20 19
7 177.82 humidity 90.0 270 < th dose independent rect. 8 7
11 179.09 temperature 20.0 270 > th dose independent rect. 8 7
27 184.01 radiation 1.0 270 > th dose independent rect. 7 9
38 185.07 temperature 10.0 270 > th dose dependent rect. 8 18
39 185.09 temperature 30.0 90 < th dose dependent rect. 5 16
52 186.50 temperature 30.0 270 < th dose dependent rect. 2 18
58 187.70 temperature 10.0 90 > th dose dependent rect. 8 21
61 188.22 radiation 30.0 270 < th dose independent rect. 15 16
70 188.57 humidity 50.0 270 > th dose independent rect. 8 7
71 188.72 radiation 1.0 270 < th dose independent rect. 4 15
78 189.27 radiation 10.0 270 < th dose dependent rect. 4 15
95 190.21 radiation 40.0 270 < th dose dependent rect. 15 16
99 190.34 atmosphere 995.0 270 > th dose independent rect. 15 17
112 190.94 precipitation 0.1 270 < th dose independent rect. 8 7
113 190.94 precipitation 0.1 270 < th dose dependent rect. 8 7
126 191.30 wind 9.0 270 < th dose independent rect. 15 17
127 191.33 atmosphere 995.0 270 > th dose independent rect. 3 17
137 191.59 atmosphere 1015.0 270 < th dose independent rect. 8 7
138 191.59 temperature 10.0 270 > th dose independent rect. 15 17
140 191.61 wind 9.0 270 < th dose independent rect. 8 7
153 191.93 temperature 10.0 270 > th dose dependent rect. 20 7
159 192.14 temperature 15.0 10 > th dose dependent rect. 9 9
161 192.25 wind 9.0 90 < th dose independent rect. 21 8
163 192.28 radiation 1.0 90 < th dose independent rect. 21 8
166 192.29 radiation 10.0 90 < th dose dependent rect. 21 8
169 192.31 precipitation 0.1 270 < th dose independent rect. 20 7
170 192.31 precipitation 0.1 270 < th dose dependent rect. 20 7
174 192.34 temperature 10.0 90 > th dose independent rect. 21 8
175 192.34 temperature 30.0 90 < th dose independent rect. 21 8
176 192.34 humidity 50.0 90 > th dose independent rect. 21 8
179 192.34 atmosphere 995.0 90 > th dose independent rect. 21 8
183 192.34 temperature 10.0 90 > th dose independent rect. 5 16
184 192.34 atmosphere 1015.0 90 < th dose independent rect. 5 16
208 192.63 temperature 10.0 270 > th dose independent rect. 3 17
209 192.63 atmosphere 1015.0 270 < th dose independent rect. 3 17
217 192.70 temperature 15.0 10 > th dose dependent rect. 9 7
224 192.96 atmosphere 995.0 270 > th dose independent rect. 8 7
227 193.09 atmosphere 995.0 90 > th dose independent rect. 5 16
229 193.13 temperature 20.0 270 > th dose independent rect. 20 19
230 193.15 temperature 30.0 270 < th dose dependent rect. 2 7
232 193.19 wind 9.0 270 < th dose independent rect. 3 17
237 193.37 wind 9.0 90 < th dose independent rect. 5 16
238 193.38 precipitation 0.1 270 < th dose independent rect. 15 17
239 193.38 precipitation 0.1 270 < th dose dependent rect. 15 17
242 193.43 precipitation 0.1 270 < th dose independent rect. 3 17
243 193.43 precipitation 0.1 270 < th dose dependent rect. 3 17
246 193.51 temperature 15.0 10 > th dose dependent rect. 9 20
248 193.52 wind 1.0 270 > th dose independent rect. 15 16
270 194.01 humidity 70.0 90 > th dose dependent rect. 5 15
274 194.06 temperature 10.0 10 > th dose dependent rect. 22 18
311 194.65 wind 1.0 270 > th dose independent rect. 8 7
335 195.06 radiation 1.0 90 < th dose dependent rect. 21 10
336 195.09 humidity 70.0 270 > th dose dependent rect. 3 16
348 195.29 radiation 1.0 90 < th dose dependent rect. 21 13
355 195.32 atmosphere 1000.0 270 > th dose independent rect. 15 5
356 195.38 precipitation 0.1 90 < th dose independent rect. 5 16
358 195.38 precipitation 0.1 90 < th dose dependent rect. 5 16
369 195.53 radiation 1.0 90 < th dose dependent rect. 21 15
516 196.30 humidity 50.0 270 > th dose independent rect. 20 19
523 196.46 humidity 50.0 270 > th dose dependent rect. 3 6
524 196.46 wind 9.0 90 < th dose dependent rect. 5 16
550 196.77 precipitation 0.1 270 < th dose independent rect. 2 7
551 196.77 precipitation 0.1 270 < th dose dependent rect. 2 7
553 196.79 precipitation 0.1 270 < th dose independent rect. 9 17
556 196.79 precipitation 0.1 270 < th dose dependent rect. 9 17
567 196.93 atmosphere 995.0 270 > th dose dependent rect. 15 5
575 197.08 temperature 30.0 270 < th dose independent rect. 2 7
576 197.08 atmosphere 1015.0 90 < th dose independent rect. 21 8
579 197.12 radiation 40.0 270 < th dose independent rect. 14 7
599 197.36 wind 7.0 270 < th dose independent rect. 2 7
611 197.45 radiation 1.0 90 < th dose independent rect. 21 13
612 197.46 wind 1.0 270 > th dose independent rect. 3 17
617 197.49 temperature 10.0 270 > th dose independent rect. 2 7
619 197.49 humidity 50.0 270 > th dose independent rect. 2 7
620 197.49 atmosphere 995.0 270 > th dose independent rect. 2 7
621 197.49 atmosphere 1015.0 270 < th dose independent rect. 2 7
622 197.49 temperature 10.0 270 > th dose independent rect. 9 17
623 197.50 temperature 20.0 10 > th dose independent rect. 9 9
631 197.53 humidity 50.0 14400 < th dose dependent rect. 12 1
633 197.55 radiation 20.0 4320 < th dose independent rect. 22 8
649 197.70 radiation 1.0 90 < th dose independent rect. 21 15
650 197.71 humidity 50.0 14400 < th dose independent rect. 12 1
651 197.71 temperature 20.0 10 > th dose independent rect. 9 7
662 197.85 humidity 50.0 270 > th dose dependent rect. 20 7
710 198.29 wind 9.0 270 < th dose independent rect. 9 17
718 198.43 radiation 1.0 270 < th dose independent sin 1 NA
729 198.50 radiation 30.0 270 < th dose independent rect. 15 5
731 198.53 wind 9.0 270 < th dose independent rect. 15 5
735 198.57 radiation 1.0 270 > th dose independent sin 1 NA
762 198.71 wind 9.0 270 < th dose independent rect. 20 19
764 198.72 precipitation 0.1 270 < th dose independent rect. 20 19
766 198.72 precipitation 0.1 270 < th dose dependent rect. 20 19
786 198.75 radiation 40.0 270 < th dose dependent rect. 3 6
788 198.76 atmosphere 1015.0 14400 < th dose independent rect. 12 10
795 198.81 atmosphere 1015.0 14400 < th dose independent rect. 11 4
817 198.89 temperature 10.0 270 > th dose independent rect. 15 5
818 198.89 atmosphere 1015.0 270 < th dose independent rect. 15 5
832 198.98 atmosphere 1015.0 14400 < th dose independent rect. 13 1
834 198.98 atmosphere 1015.0 14400 > th dose independent rect. 12 10
847 199.02 atmosphere 1015.0 14400 > th dose independent rect. 11 3
874 199.13 atmosphere 1015.0 14400 > th dose dependent rect. 11 1
892 199.15 atmosphere 1015.0 14400 > th dose independent rect. 12 1
911 199.22 wind 9.0 270 < th dose independent rect. 21 17
915 199.23 atmosphere 1015.0 14400 > th dose dependent rect. 10 3
919 199.25 wind 9.0 270 < th dose independent rect. 14 7
926 199.27 humidity 50.0 14400 < th dose dependent rect. 11 22
963 199.34 atmosphere 1015.0 14400 < th dose independent rect. 18 3
965 199.35 wind 1.0 270 > th dose independent rect. 15 5
972 199.37 atmosphere 1015.0 14400 < th dose independent sin 19 NA
996 199.42 atmosphere 1015.0 14400 > th dose independent rect. 16 6