BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0193100 Os08g0193100|AK099597
         (129 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0193100  Similar to Geranyl diphosphate synthase             222   6e-59
Os06g0678200  Similar to Geranyl diphosphate synthase             148   1e-36
Os12g0271700  Similar to Solanesyl diphosphate synthase 1          74   3e-14
AK066579                                                           71   3e-13

>Os08g0193100 Similar to Geranyl diphosphate synthase
          Length = 129

 Score =  222 bits (565), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 112/129 (86%), Positives = 112/129 (86%)

Query: 1   SCDACLSGIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQ 60
           SCDACLSGIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQ
Sbjct: 1   SCDACLSGIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQ 60

Query: 61  GFDDPSNVDAALAYLARSKGIERTRXXXXXXXXXXXXXXXXXPESKDGSVLISRQALKDL 120
           GFDDPSNVDAALAYLARSKGIERTR                 PESKDGSVLISRQALKDL
Sbjct: 61  GFDDPSNVDAALAYLARSKGIERTRLLAAEHAKLAADAIDALPESKDGSVLISRQALKDL 120

Query: 121 TEKLIKRTK 129
           TEKLIKRTK
Sbjct: 121 TEKLIKRTK 129



>Os06g0678200 Similar to Geranyl diphosphate synthase
          Length = 430

 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 92/122 (75%)

Query: 8   GIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQGFDDPSN 67
           G+A+QLIDD+LDFTGTSASLGKGSL+DI  GI+TAP+L+AMEE+PQL  +V++GFD+P+N
Sbjct: 309 GLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPAN 368

Query: 68  VDAALAYLARSKGIERTRXXXXXXXXXXXXXXXXXPESKDGSVLISRQALKDLTEKLIKR 127
           V+ AL YL +S+GIE+T+                 P+S D  VL SR+AL D+TE++I R
Sbjct: 369 VELALDYLQKSRGIEKTKELAREHANRAIKAIEALPDSDDEDVLTSRRALIDITERVITR 428

Query: 128 TK 129
           TK
Sbjct: 429 TK 430



>Os12g0271700 Similar to Solanesyl diphosphate synthase 1
          Length = 372

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 57/78 (73%)

Query: 8   GIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQGFDDPSN 67
           G+++Q++DDILDFT ++  LGK + SD+ +G +TAP++FA+++ PQLR I++  F + ++
Sbjct: 257 GLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNS 316

Query: 68  VDAALAYLARSKGIERTR 85
           +  A+  + RS GI+R  
Sbjct: 317 LATAIELVHRSGGIKRAH 334



>AK066579 
          Length = 403

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 56/78 (71%)

Query: 8   GIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQGFDDPSN 67
           G+++Q++DDILDFT ++  LGK + SD+ +G +TAP++FA+++ P+LR I++  F +  +
Sbjct: 288 GLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDS 347

Query: 68  VDAALAYLARSKGIERTR 85
           +  A+  + RS GI R +
Sbjct: 348 LATAIDLVHRSGGIRRAQ 365



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,429,828
Number of extensions: 112043
Number of successful extensions: 178
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 4
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)