Os06g0678200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Geranyl diphosphate synthase.
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Os06g0678200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Geranyl diphosphate synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.27 | 0.236 | 10.3 | -0.141 | 0.388 | 1.15 | -0.368 | -0.33 | 0.038 | 5.05 | 29.76 | 106 | -- | -- |
| 25.39 | 0.235 | 10.3 | -0.175 | 0.384 | 1.15 | -0.441 | -- | 0.038 | 4.87 | 29.47 | 113 | -- | -- |
| 25.54 | 0.235 | 10.3 | -0.124 | 0.395 | 1.14 | -- | -0.466 | 0.0469 | 5.22 | 29.4 | 105 | -- | -- |
| 25.86 | 0.237 | 10.3 | -0.192 | 0.385 | 1.15 | -- | -- | 0.031 | 5.22 | 29.31 | 109 | -- | -- |
| 31.12 | 0.26 | 10.3 | -0.0272 | -- | 1.51 | -- | -0.532 | 0.0906 | -- | 31.17 | 142 | -- | -- |
| 43.27 | 0.308 | 10.3 | -0.485 | 0.729 | -- | -0.379 | -- | -0.204 | 4.12 | -- | -- | -- | -- |
| 43.67 | 0.309 | 10.3 | -0.48 | 0.727 | -- | -- | -- | -0.202 | 4.16 | -- | -- | -- | -- |
| 31.4 | 0.261 | 10.3 | -0.113 | -- | 1.5 | -- | -- | 0.0784 | -- | 30.67 | 148 | -- | -- |
| 26.75 | 0.241 | 10.3 | -- | 0.355 | 1.23 | -- | -- | 0.0568 | 5.35 | 29.31 | 113 | -- | -- |
| 72.33 | 0.397 | 10.3 | -0.451 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 49.76 | 0.33 | 10.3 | -- | 0.718 | -- | -- | -- | -0.148 | 4.17 | -- | -- | -- | -- |
| 31.7 | 0.262 | 10.3 | -- | -- | 1.52 | -- | -- | 0.0958 | -- | 30.56 | 149 | -- | -- |
| 77.7 | 0.411 | 10.3 | -- | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.89 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 7 | 24.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 9 | 24.85 | temperature | 30 | 90 | < th | dose dependent | sin | 6 | NA |
| 11 | 24.86 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 25 | 25.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 27 | 25.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 30 | 25.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 36 | 25.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 40 | 25.31 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 54 | 25.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 76 | 25.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 79 | 25.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 80 | 25.85 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 84 | 25.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 103 | 26.05 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 130 | 26.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 173 | 26.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 273 | 27.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 278 | 27.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 279 | 27.40 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 289 | 27.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 383 | 27.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 393 | 27.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 522 | 28.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 549 | 28.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 768 | 28.88 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 769 | 28.88 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 794 | 28.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 804 | 28.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 805 | 28.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 853 | 29.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 891 | 29.09 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 13 |
| 892 | 29.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 13 |
| 930 | 29.12 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 946 | 29.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 11 |
| 961 | 29.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 987 | 29.16 | temperature | 10 | 4320 | > th | dose dependent | sin | 9 | NA |
| 992 | 29.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 9 |