BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0678200 Os06g0678200|AK071299
(430 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0678200 Similar to Geranyl diphosphate synthase 803 0.0
Os12g0271700 Similar to Solanesyl diphosphate synthase 1 251 8e-67
AK066579 249 4e-66
Os08g0193100 Similar to Geranyl diphosphate synthase 169 4e-42
Os01g0248701 Polyprenyl synthetase family protein 67 2e-11
>Os06g0678200 Similar to Geranyl diphosphate synthase
Length = 430
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/401 (98%), Positives = 394/401 (98%)
Query: 30 RLFSSAAALLGRHXXXXXXXHYQIRSKVVGCRGATFVSSRWLHDAQYQVRQDGLSRSEEQ 89
RLFSSAAALLGRH HYQIRSKVVGCRGATFVSSRWLHDAQYQVRQDGLSRSEEQ
Sbjct: 30 RLFSSAAALLGRHPPPPSPPHYQIRSKVVGCRGATFVSSRWLHDAQYQVRQDGLSRSEEQ 89
Query: 90 QDPFELVADELSLLANRLRSMVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKF 149
QDPFELVADELSLLANRLRSMVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKF
Sbjct: 90 QDPFELVADELSLLANRLRSMVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKF 149
Query: 150 PLSDSTEVGVLTILANKLRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMG 209
PLSDSTEVGVLTILANKLRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMG
Sbjct: 150 PLSDSTEVGVLTILANKLRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMG 209
Query: 210 NKLSVLAGDFLLSRACVALAALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYL 269
NKLSVLAGDFLLSRACVALAALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYL
Sbjct: 210 NKLSVLAGDFLLSRACVALAALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYL 269
Query: 270 QKTYYKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLG 329
QKTYYKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLG
Sbjct: 270 QKTYYKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLG 329
Query: 330 KGSLTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELA 389
KGSLTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELA
Sbjct: 330 KGSLTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELA 389
Query: 390 REHANRAIKAIEALPDSDDEDVLTSRRALIDITERVITRTK 430
REHANRAIKAIEALPDSDDEDVLTSRRALIDITERVITRTK
Sbjct: 390 REHANRAIKAIEALPDSDDEDVLTSRRALIDITERVITRTK 430
>Os12g0271700 Similar to Solanesyl diphosphate synthase 1
Length = 372
Score = 251 bits (641), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 206/315 (65%), Gaps = 13/315 (4%)
Query: 93 FELVADELSLLANRLRSMVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKFPLS 152
E+VAD+L L N L+S+V AE P L SAAE F GA GKR RP ++ L++ A
Sbjct: 54 LEVVADDLLKLNNNLKSLVGAENPVLVSAAEQIF--GAGGKRLRPALVFLVSRA------ 105
Query: 153 DSTEVGVLTILANKLRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMGNKL 212
+ E+ L +L T Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G ++
Sbjct: 106 -TAELAGLL----ELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRV 160
Query: 213 SVLAGDFLLSRACVALAALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYLQKT 272
+VLAGDF+ +++ LA L N EV+ L++ ++ +GE Q ST + ++D YL K+
Sbjct: 161 AVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKS 220
Query: 273 YYKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGS 332
YYKTASLI+ S ++ AI +G + + YEYGRNLGL+FQ++DD+LDFT ++ LGK +
Sbjct: 221 YYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPA 280
Query: 333 LTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELAREH 392
+D+ G +TAP+++A+++ PQL E++D F ++ A++ + +S GI++ ELARE
Sbjct: 281 GSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREK 340
Query: 393 ANRAIKAIEALPDSD 407
AI++++ LP S+
Sbjct: 341 GEIAIQSLQCLPRSE 355
>AK066579
Length = 403
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 206/314 (65%), Gaps = 13/314 (4%)
Query: 93 FELVADELSLLANRLRSMVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKFPLS 152
E+V+D+L L N L+S+V AE P L SAAE F GA GKR RP ++ L++ A
Sbjct: 85 LEVVSDDLLKLNNNLKSLVGAENPVLVSAAEQIF--GAGGKRLRPALVFLVSRA------ 136
Query: 153 DSTEVGVLTILANKLRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMGNKL 212
+ E+ L +L T Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G ++
Sbjct: 137 -TAELAGLL----ELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRV 191
Query: 213 SVLAGDFLLSRACVALAALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYLQKT 272
+VLAGDF+ +++ LA L N EV+ L++ ++ +GE Q ST + ++D YL K+
Sbjct: 192 AVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKS 251
Query: 273 YYKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGS 332
YYKTASL+++S ++ AI +G + + YEYGRNLGL+FQ++DD+LDFT ++ LGK +
Sbjct: 252 YYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPA 311
Query: 333 LTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELAREH 392
+D+ G +TAP+++A+++ P+L E++D F ++ A+D + +S GI + +ELA+E
Sbjct: 312 GSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEK 371
Query: 393 ANRAIKAIEALPDS 406
+ A++ ++ LP S
Sbjct: 372 GDLALQNLQCLPKS 385
>Os08g0193100 Similar to Geranyl diphosphate synthase
Length = 129
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 103/122 (84%)
Query: 309 GLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPAN 368
G+A+QLIDD+LDFTGTSASLGKGSL+DI GI+TAP+L+AMEE+PQL +V++GFD+P+N
Sbjct: 8 GIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQGFDDPSN 67
Query: 369 VELALDYLQKSRGIEKTKELAREHANRAIKAIEALPDSDDEDVLTSRRALIDITERVITR 428
V+ AL YL +S+GIE+T+ LA EHA A AI+ALP+S D VL SR+AL D+TE++I R
Sbjct: 68 VDAALAYLARSKGIERTRLLAAEHAKLAADAIDALPESKDGSVLISRQALKDLTEKLIKR 127
Query: 429 TK 430
TK
Sbjct: 128 TK 129
>Os01g0248701 Polyprenyl synthetase family protein
Length = 376
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 28/194 (14%)
Query: 178 TEMIHVASLLHDDV--LDDADTRRGVSSLNCIMGNKLSVLAGDFL-------LSRACV-- 226
EMIH SL+HDD+ +DD RRG S + G ++LAGD L ++R C
Sbjct: 152 VEMIHTMSLIHDDMPCMDDDALRRGRPSNHVAFGEFTALLAGDALHALAFEHVARGCGDH 211
Query: 227 ---------ALAALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYLQKTYYKTA 277
A+A LG+ +A E + +S + M Y+ +KTA
Sbjct: 212 GVPADRTLRAVAELGSASGTGGVAAGQVADKESEGLPVSLA------MLEYIH--VHKTA 263
Query: 278 SLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIR 337
L+ + + AI+ G Y R +GL FQ++DDVLD T TS LGK + D+
Sbjct: 264 RLLEAAAVSGAIVGGGADAEVERVRRYARCVGLLFQVVDDVLDMTSTSEQLGKTAGKDVE 323
Query: 338 HGIITAPMLYAMEE 351
T P L +++
Sbjct: 324 ADKATYPKLLGVDK 337
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,334,191
Number of extensions: 421412
Number of successful extensions: 1134
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 6
Length of query: 430
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 326
Effective length of database: 11,605,545
Effective search space: 3783407670
Effective search space used: 3783407670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)