BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0193100 Os08g0193100|AK099597
         (129 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34630.2  | chr2:14578689-14581632 FORWARD LENGTH=423          142   5e-35
AT1G17050.1  | chr1:5829289-5831215 FORWARD LENGTH=418             73   4e-14
AT1G78510.1  | chr1:29535410-29537163 REVERSE LENGTH=407           72   9e-14

>AT2G34630.2 | chr2:14578689-14581632 FORWARD LENGTH=423
          Length = 422

 Score =  142 bits (358), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 85/122 (69%)

Query: 8   GIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQGFDDPSN 67
           G+A+QLIDDILDFTGTSASLGKGSLSDI  G++TAPILFAMEE+PQLR +V+Q   DP N
Sbjct: 301 GLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRN 360

Query: 68  VDAALAYLARSKGIERTRXXXXXXXXXXXXXXXXXPESKDGSVLISRQALKDLTEKLIKR 127
           VD AL YL +SKGI+R R                 PE+ +  V  SR+AL DLT ++I R
Sbjct: 361 VDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITR 420

Query: 128 TK 129
            K
Sbjct: 421 NK 422



>AT1G17050.1 | chr1:5829289-5831215 FORWARD LENGTH=418
          Length = 417

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 56/78 (71%)

Query: 8   GIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQGFDDPSN 67
           G+++Q++DDILDFT ++  LGK + +D+ +G +TAP++FA+E  P+LR I+E  F +P +
Sbjct: 302 GLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFALENEPRLREIIESEFCEPGS 361

Query: 68  VDAALAYLARSKGIERTR 85
           ++ A+  +    GI++ +
Sbjct: 362 LEEAIEIVRNRGGIKKAQ 379



>AT1G78510.1 | chr1:29535410-29537163 REVERSE LENGTH=407
          Length = 406

 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 56/78 (71%)

Query: 8   GIAYQLIDDILDFTGTSASLGKGSLSDIHQGIVTAPILFAMEEYPQLRVIVEQGFDDPSN 67
           G+++Q++DDILDFT ++  LGK + SD+ +G +TAP++FA+E  P+LR I+E  F +  +
Sbjct: 291 GLSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEREPRLREIIESEFCEAGS 350

Query: 68  VDAALAYLARSKGIERTR 85
           ++ A+  + +  GI+R +
Sbjct: 351 LEEAIEAVTKGGGIKRAQ 368



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,281,371
Number of extensions: 74038
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 3
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)